Difference between revisions of "RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42."

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(Created page with "Category:reaction == Reaction ISOLEUCINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** isoleucine-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction RXN-9952 == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase (decarboxylating) ** 6-phosphogluconate dehydrogen...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ISOLEUCINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-9952 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** isoleucine-trna ligase
+
** phosphogluconate dehydrogenase (decarboxylating)
 +
** 6-phosphogluconate dehydrogenase, decarboxylating
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.5 ec-6.1.1.5]
+
** [http://enzyme.expasy.org/EC/1.1.1.44 ec-1.1.1.44]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[ILE]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-2961]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03174]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11815]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14331]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22264]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12698]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ16361]]
+
* Gene: [[SJ06127]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03173]]
+
* Gene: [[SJ11912]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ15062]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00878]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ12699]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16180]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11061 11061]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01528 R01528]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P18330 P18330]
 
−
** [http://www.uniprot.org/uniprot/P36422 P36422]
 
−
** [http://www.uniprot.org/uniprot/O29622 O29622]
 
−
** [http://www.uniprot.org/uniprot/P47587 P47587]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
 
−
** [http://www.uniprot.org/uniprot/P46213 P46213]
 
−
** [http://www.uniprot.org/uniprot/P41257 P41257]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
 
−
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
 
−
** [http://www.uniprot.org/uniprot/O83466 O83466]
 
−
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
 
−
** [http://www.uniprot.org/uniprot/P56456 P56456]
 
−
** [http://www.uniprot.org/uniprot/O58792 O58792]
 
−
** [http://www.uniprot.org/uniprot/O84022 O84022]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
 
−
** [http://www.uniprot.org/uniprot/O66651 O66651]
 
−
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
 
−
** [http://www.uniprot.org/uniprot/O27428 O27428]
 
−
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
 
−
** [http://www.uniprot.org/uniprot/O51773 O51773]
 
−
** [http://www.uniprot.org/uniprot/P46207 P46207]
 
−
** [http://www.uniprot.org/uniprot/P41252 P41252]
 
−
** [http://www.uniprot.org/uniprot/P41972 P41972]
 
−
** [http://www.uniprot.org/uniprot/P48526 P48526]
 
−
** [http://www.uniprot.org/uniprot/P75258 P75258]
 
−
** [http://www.uniprot.org/uniprot/P73505 P73505]
 
−
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
 
−
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
 
−
** [http://www.uniprot.org/uniprot/P43824 P43824]
 
−
** [http://www.uniprot.org/uniprot/P09436 P09436]
 
−
** [http://www.uniprot.org/uniprot/P00956 P00956]
 
−
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=isoleucine-trna ligase}}
+
{{#set: common-name=6-phosphogluconate dehydrogenase, decarboxylating|phosphogluconate dehydrogenase (decarboxylating)}}
−
{{#set: ec-number=ec-6.1.1.5}}
+
{{#set: ec-number=ec-1.1.1.44}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=11}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}

Revision as of 13:14, 14 January 2021

Reaction RXN-9952

  • direction:
    • left-to-right
  • common-name:
    • phosphogluconate dehydrogenase (decarboxylating)
    • 6-phosphogluconate dehydrogenase, decarboxylating
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • OXIDATIVEPENT-PWY, pentose phosphate pathway (oxidative branch) I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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