Difference between revisions of "RXN66-81"

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(Created page with "Category:reaction == Reaction MALIC-NADP-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase ** oxaloacetate decarboxylase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction RXN-17116 == * direction: ** left-to-right * common-name: ** acetyl-coa c-acyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MALIC-NADP-RXN ==
+
== Reaction RXN-17116 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** malate dehydrogenase
+
** acetyl-coa c-acyltransferase
−
** oxaloacetate decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.40 ec-1.1.1.40]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NADP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[CPD-18494]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-17365]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13180]]
+
* Gene: [[SJ21817]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14191]]
+
* Gene: [[SJ16470]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11643]]
+
* Gene: [[SJ21818]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
+
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''8''' reactions found over '''13''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18254 18254]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00216 R00216]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P12628 P12628]
 
−
** [http://www.uniprot.org/uniprot/P06801 P06801]
 
−
** [http://www.uniprot.org/uniprot/P13697 P13697]
 
−
** [http://www.uniprot.org/uniprot/P16243 P16243]
 
−
** [http://www.uniprot.org/uniprot/O48656 O48656]
 
−
** [http://www.uniprot.org/uniprot/P22178 P22178]
 
−
** [http://www.uniprot.org/uniprot/P93139 P93139]
 
−
** [http://www.uniprot.org/uniprot/P34105 P34105]
 
−
** [http://www.uniprot.org/uniprot/P28227 P28227]
 
−
** [http://www.uniprot.org/uniprot/P36444 P36444]
 
−
** [http://www.uniprot.org/uniprot/P40927 P40927]
 
−
** [http://www.uniprot.org/uniprot/P37223 P37223]
 
−
** [http://www.uniprot.org/uniprot/P48163 P48163]
 
−
** [http://www.uniprot.org/uniprot/Q16798 Q16798]
 
−
** [http://www.uniprot.org/uniprot/O50015 O50015]
 
−
** [http://www.uniprot.org/uniprot/O04935 O04935]
 
−
** [http://www.uniprot.org/uniprot/O04936 O04936]
 
−
** [http://www.uniprot.org/uniprot/P37222 P37222]
 
−
** [http://www.uniprot.org/uniprot/Q42888 Q42888]
 
−
** [http://www.uniprot.org/uniprot/Q42889 Q42889]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=malate dehydrogenase|oxaloacetate decarboxylase}}
+
{{#set: common-name=acetyl-coa c-acyltransferase}}
−
{{#set: ec-number=ec-1.1.1.40}}
+
{{#set: ec-number=ec-2.3.1.16}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:36, 5 January 2021

Reaction RXN-17116

  • direction:
    • left-to-right
  • common-name:
    • acetyl-coa c-acyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7726, (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
    • 8 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN66-81&oldid=77239"