Difference between revisions of "RXNQT-4141"

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(Created page with "Category:reaction == Reaction AGMATINE-DEIMINASE-RXN == * direction: ** left-to-right * common-name: ** agmatine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5...")
(Created page with "Category:reaction == Reaction RXNQT-4141 == * direction: ** left-to-right * common-name: ** gdp-l-galactose phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.7....")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AGMATINE-DEIMINASE-RXN ==
+
== Reaction RXNQT-4141 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** agmatine deaminase
+
** gdp-l-galactose phosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.3.12 ec-3.5.3.12]
+
** [http://enzyme.expasy.org/EC/2.7.7.69 ec-2.7.7.69]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-597]][c]
+
* 1 [[GDP-L-GALACTOSE]][c] '''+''' 1 [[Pi]][c] '''=>''' 1 [[CPDQT-4]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16434]]
+
* Gene: [[SJ18078]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
+
* [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-43]], putrescine biosynthesis II:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR111272
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18038 18038]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27699 27699]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01416 R01416]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07678 R07678]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=agmatine deaminase}}
+
{{#set: common-name=gdp-l-galactose phosphorylase}}
−
{{#set: ec-number=ec-3.5.3.12}}
+
{{#set: ec-number=ec-2.7.7.69}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXNQT-4141

  • direction:
    • left-to-right
  • common-name:
    • gdp-l-galactose phosphorylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-882, L-ascorbate biosynthesis I (plants, L-galactose pathway):
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR111272
  • RHEA:
  • LIGAND-RXN:





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