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| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10814 RXN-10814] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6855 PWY-6855] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** reversible | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2157 tax-2157] |
| | * common-name: | | * common-name: |
| − | ** l-phenylalanine aminotransferase | + | ** chitin degradation i (archaea) |
| − | ** l-phenylalanine:2-oxoglutarate aminotransferase
| + | == Reaction(s) found == |
| − | * ec-number:
| + | * [[3.2.1.14-RXN]] |
| − | ** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
| + | == Reaction(s) not found == |
| − | == Reaction formula == | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12545 RXN-12545] |
| − | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PHE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSAMINE-6-P-DEAMIN-RXN GLUCOSAMINE-6-P-DEAMIN-RXN] |
| − | == Gene(s) associated with this reaction ==
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12309 RXN-12309] |
| − | * Gene: [[SJ08678]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=N-ACETYLGLUCOSAMINE-DEACETYLASE-RXN N-ACETYLGLUCOSAMINE-DEACETYLASE-RXN] |
| − | ** Category: [[orthology]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12543 RXN-12543] |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-12544 RXN-12544] |
| − | * Gene: [[SJ20943]]
| + | {{#set: taxonomic-range=tax-2157}} |
| − | ** Category: [[annotation]]
| + | {{#set: common-name=chitin degradation i (archaea)}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| + | {{#set: nb reaction found=1}} |
| − | * Gene: [[SJ04188]]
| + | {{#set: completion rate=0.14}} |
| − | ** Category: [[annotation]]
| + | {{#set: nb total reaction=7}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ05778]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ07646]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) == | |
| − | * [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6318 PWY-6318] | |
| − | ** '''4''' reactions found over '''9''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P04693 P04693]
| |
| − | ** [http://www.uniprot.org/uniprot/P74861 P74861]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
| |
| − | ** [http://www.uniprot.org/uniprot/P95468 P95468]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
| |
| − | ** [http://www.uniprot.org/uniprot/O58489 O58489]
| |
| − | ** [http://www.uniprot.org/uniprot/O59096 O59096]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
| |
| − | ** [http://www.uniprot.org/uniprot/Q02636 Q02636]
| |
| − | ** [http://www.uniprot.org/uniprot/O84642 O84642]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00694 R00694]
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25155 25155]
| |
| − | </div>
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=l-phenylalanine:2-oxoglutarate aminotransferase|l-phenylalanine aminotransferase}} | |
| − | {{#set: ec-number=ec-2.6.1.1}}
| |
| − | {{#set: nb gene associated=5}} | |
| − | {{#set: nb pathway associated=1}}
| |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | |
