Difference between revisions of "Red-Thioredoxin"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5581 RXN-5581] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1....")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** reversible * common-name: ** betaine-aldehyde dehydrogenase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5581 RXN-5581] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** betaine-aldehyde dehydrogenase
 +
** betaine aldehyde dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.5 ec-1.2.1.5]
+
** [http://enzyme.expasy.org/EC/1.2.1.8 ec-1.2.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[INDOLE_ACETATE_AUXIN]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06456]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00435]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ11330]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22552]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ11331]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ09287]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06047]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05897]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3162]], L-tryptophan degradation V (side chain pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3162 PWY-3162]
+
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
−
** '''2''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30868 30868]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
−
{{#set: ec-number=ec-1.2.1.5}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=2}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
−
{{#set: nb pathway associated=1}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P17202 P17202]
 +
** [http://www.uniprot.org/uniprot/P17445 P17445]
 +
** [http://www.uniprot.org/uniprot/P28237 P28237]
 +
** [http://www.uniprot.org/uniprot/P42757 P42757]
 +
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
 +
** [http://www.uniprot.org/uniprot/O24174 O24174]
 +
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
 +
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
 +
** [http://www.uniprot.org/uniprot/O22477 O22477]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=betaine aldehyde dehydrogenase|betaine-aldehyde dehydrogenase}}
 +
{{#set: ec-number=ec-1.2.1.8}}
 +
{{#set: nb gene associated=7}}
 +
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction BADH-RXN

  • direction:
    • reversible
  • common-name:
    • betaine-aldehyde dehydrogenase
    • betaine aldehyde dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 1 reactions found over 3 reactions in the full pathway
  • BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria): BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY, choline degradation I: CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria): PWY-3722
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=Red-Thioredoxin&oldid=21835"