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| − | [[Category:reaction]] | + | [[Category:metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == | + | == Metabolite Red-Thioredoxin == |
| − | * direction:
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| − | ** reversible
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| | * common-name: | | * common-name: |
| − | ** betaine-aldehyde dehydrogenase | + | ** a reduced thioredoxin |
| − | ** betaine aldehyde dehydrogenase
| + | == Reaction(s) known to consume the compound == |
| − | * ec-number:
| + | * [[1.17.4.2-RXN]] |
| − | ** [http://enzyme.expasy.org/EC/1.2.1.8 ec-1.2.1.8]
| + | * [[1.8.4.12-RXN]] |
| − | == Reaction formula == | + | * [[1.8.4.14-RXN]] |
| − | * 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] | + | * [[1.8.4.8-RXN]] |
| − | == Gene(s) associated with this reaction ==
| + | * [[ADPREDUCT-RXN]] |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [[CDPREDUCT-RXN]] |
| − | * Gene: [[SJ00435]]
| + | * [[DAOTO]] |
| − | ** Category: [[annotation]] | + | * [[DCDT]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | * [[DGOTO]] |
| − | ** Category: [[orthology]]
| + | * [[DUDT]] |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | + | * [[GDPREDUCT-RXN]] |
| − | * Gene: [[SJ11330]]
| + | * [[MERCAPYSTRANS-RXN]] |
| − | ** Category: [[annotation]]
| + | * [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| + | * [[RXN-12019]] |
| − | * Gene: [[SJ22552]]
| + | * [[RXN-8668]] |
| − | ** Category: [[annotation]]
| + | * [[RXN0-267]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| + | * [[RXN0-5468]] |
| − | * Gene: [[SJ11331]]
| + | * [[UDPREDUCT-RXN]] |
| − | ** Category: [[annotation]]
| + | == Reaction(s) known to produce the compound == |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | + | * [[1.8.4.12-RXN]] |
| − | * Gene: [[SJ09287]]
| + | * [[1.8.4.8-RXN]] |
| − | ** Category: [[annotation]]
| + | * [[TDSR]] |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | + | * [[THIOREDOXIN-REDUCT-NADPH-RXN]] |
| − | * Gene: [[SJ06047]]
| + | == Reaction(s) of unknown directionality == |
| − | ** Category: [[annotation]] | + | {{#set: common-name=a reduced thioredoxin}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | |
| − | * Gene: [[SJ05897]] | |
| − | ** Category: [[orthology]] | |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | |
| − | </div>
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| − | == Pathway(s) ==
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| − | * [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
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| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
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| − | * [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY] | |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
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| − | * [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY] | |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722] | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494] | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | |
| − | == External links == | |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P17202 P17202]
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| − | ** [http://www.uniprot.org/uniprot/P17445 P17445]
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| − | ** [http://www.uniprot.org/uniprot/P28237 P28237]
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| − | ** [http://www.uniprot.org/uniprot/P42757 P42757]
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| − | ** [http://www.uniprot.org/uniprot/Q40024 Q40024]
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| − | ** [http://www.uniprot.org/uniprot/O24174 O24174]
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| − | ** [http://www.uniprot.org/uniprot/Q43828 Q43828]
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| − | ** [http://www.uniprot.org/uniprot/Q43829 Q43829]
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| − | ** [http://www.uniprot.org/uniprot/O22477 O22477]
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| − | {{#set: direction=reversible}}
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| − | {{#set: common-name=betaine aldehyde dehydrogenase|betaine-aldehyde dehydrogenase}}
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| − | {{#set: ec-number=ec-1.2.1.8}}
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| − | {{#set: nb gene associated=7}}
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| − | {{#set: nb pathway associated=5}}
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| − | {{#set: reconstruction category=orthology|annotation}}
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| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
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| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
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