Difference between revisions of "Relaxed-DNAs"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IMDHT_LPAREN_3c2hmp_RPAREN_ IMDHT_LPAREN_3c2hmp_RPAREN_] == * direction: ** reversible * common-nam...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEHYDROG-RXN HOMOSERDEHYDROG-RXN] == * direction: ** left-to-right * common-name: ** homoser...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERDEHYDROG-RXN HOMOSERDEHYDROG-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** 3- | + | ** homoserine dehydrogenase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.1.1.3 ec-1.1.1.3] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[HOMO-SER]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ20686]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ16019]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | * Gene: [[SJ22223]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15759 15759] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
− | {{#set: reconstruction category=orthology}} | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01773 R01773] |
− | {{#set: reconstruction tool=pantograph}} | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01775 R01775] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P44505 P44505] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58997 Q58997] | ||
+ | ** [http://www.uniprot.org/uniprot/P27725 P27725] | ||
+ | ** [http://www.uniprot.org/uniprot/O67677 O67677] | ||
+ | ** [http://www.uniprot.org/uniprot/P19582 P19582] | ||
+ | ** [http://www.uniprot.org/uniprot/P00561 P00561] | ||
+ | ** [http://www.uniprot.org/uniprot/P00562 P00562] | ||
+ | ** [http://www.uniprot.org/uniprot/P08499 P08499] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JR84 Q9JR84] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIX8 Q9PIX8] | ||
+ | ** [http://www.uniprot.org/uniprot/P56429 P56429] | ||
+ | ** [http://www.uniprot.org/uniprot/O27300 O27300] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CGD8 Q9CGD8] | ||
+ | ** [http://www.uniprot.org/uniprot/P52985 P52985] | ||
+ | ** [http://www.uniprot.org/uniprot/P31116 P31116] | ||
+ | ** [http://www.uniprot.org/uniprot/P37142 P37142] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18] | ||
+ | ** [http://www.uniprot.org/uniprot/P52986 P52986] | ||
+ | ** [http://www.uniprot.org/uniprot/P49079 P49079] | ||
+ | ** [http://www.uniprot.org/uniprot/P49080 P49080] | ||
+ | ** [http://www.uniprot.org/uniprot/P93402 P93402] | ||
+ | ** [http://www.uniprot.org/uniprot/O81852 O81852] | ||
+ | ** [http://www.uniprot.org/uniprot/O63067 O63067] | ||
+ | ** [http://www.uniprot.org/uniprot/O65027 O65027] | ||
+ | ** [http://www.uniprot.org/uniprot/P46806 P46806] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=homoserine dehydrogenase}} | ||
+ | {{#set: ec-number=ec-1.1.1.3}} | ||
+ | {{#set: nb gene associated=3}} | ||
+ | {{#set: nb pathway associated=1}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction HOMOSERDEHYDROG-RXN
- direction:
- left-to-right
- common-name:
- homoserine dehydrogenase
- ec-number:
Reaction formula
- 1 L-ASPARTATE-SEMIALDEHYDE[c] + 1 NADH-P-OR-NOP[c] + 1 PROTON[c] => 1 HOMO-SER[c] + 1 NAD-P-OR-NOP[c]
Gene(s) associated with this reaction
- Gene: SJ20686
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16019
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ22223
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- HOMOSERSYN-PWY, L-homoserine biosynthesis: HOMOSERSYN-PWY
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links