Difference between revisions of "Ribonucleosides"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.2-RXN 1.3.7.2-RXN] == * direction: ** left-to-right * common-name: ** 15,16-dihydrobiliverdin...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** reversible * common-name: ** isopentenyl diphosphate is...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** isopentenyl diphosphate isomerase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ13532]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ15203]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524] | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922] | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859] | ||
** '''3''' reactions found over '''4''' reactions in the full pathway | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
− | + | </div> | |
− | |||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23287 23287] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P15496 P15496] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/Q10132 Q10132] |
+ | ** [http://www.uniprot.org/uniprot/Q38929 Q38929] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42553 Q42553] | ||
+ | ** [http://www.uniprot.org/uniprot/P93355 P93355] | ||
+ | ** [http://www.uniprot.org/uniprot/O81691 O81691] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0] | ||
+ | ** [http://www.uniprot.org/uniprot/O81660 O81660] | ||
+ | ** [http://www.uniprot.org/uniprot/O81659 O81659] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=isopentenyl diphosphate isomerase}} | ||
+ | {{#set: ec-number=ec-5.3.3.2}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=10}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} |
Revision as of 14:24, 26 August 2019
Contents
Reaction IPPISOM-RXN
- direction:
- reversible
- common-name:
- isopentenyl diphosphate isomerase
- ec-number:
Reaction formula
- 1 DELTA3-ISOPENTENYL-PP[c] <=> 1 CPD-4211[c]
Gene(s) associated with this reaction
- Gene: SJ13532
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ15203
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
- 2 reactions found over 5 reactions in the full pathway
- PWY-6174, mevalonate pathway II (archaea): PWY-6174
- 6 reactions found over 7 reactions in the full pathway
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 9 reactions found over 9 reactions in the full pathway
- PWY-7524, mevalonate pathway III (archaea): PWY-7524
- 5 reactions found over 8 reactions in the full pathway
- PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
- 7 reactions found over 8 reactions in the full pathway
- PWY-922, mevalonate pathway I: PWY-922
- 7 reactions found over 7 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: