Difference between revisions of "S-2-HYDROXY-ACID-OXIDASE-RXN"

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(Created page with "Category:reaction == Reaction FADSYN-RXN == * direction: ** left-to-right * common-name: ** fmn adenylyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.2 ec...")
(Created page with "Category:reaction == Reaction 1.5.1.20-RXN == * direction: ** left-to-right * common-name: ** 5,10-methylenetetrahydrofolate reductase ** methylenetetrahydrofolate reducta...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction FADSYN-RXN ==
+
== Reaction 1.5.1.20-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fmn adenylyltransferase
+
** 5,10-methylenetetrahydrofolate reductase
 +
** methylenetetrahydrofolate reductase (nad(p)h)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.2 ec-2.7.7.2]
+
** [http://enzyme.expasy.org/EC/1.5.1.20 ec-1.5.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FAD]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07922]]
+
* Gene: [[SJ09591]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00206]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00407]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01760]]
+
* Gene: [[SJ19532]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01107]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-366]], flavin biosynthesis IV (mammalian):
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6167]], flavin biosynthesis II (archaea):
+
* [[PWY-3841]], folate transformations II (plants):
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6168]], flavin biosynthesis III (fungi):
+
* [[PWY-2201]], folate transformations I:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR114983
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17238 17238]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00161 R00161]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
+
** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93]
−
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
+
** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7]
−
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
+
** [http://www.uniprot.org/uniprot/P45208 P45208]
 +
** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1]
 +
** [http://www.uniprot.org/uniprot/P11003 P11003]
 +
** [http://www.uniprot.org/uniprot/P46151 P46151]
 +
** [http://www.uniprot.org/uniprot/P53128 P53128]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fmn adenylyltransferase}}
+
{{#set: common-name=methylenetetrahydrofolate reductase (nad(p)h)|5,10-methylenetetrahydrofolate reductase}}
−
{{#set: ec-number=ec-2.7.7.2}}
+
{{#set: ec-number=ec-1.5.1.20}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction 1.5.1.20-RXN

  • direction:
    • left-to-right
  • common-name:
    • 5,10-methylenetetrahydrofolate reductase
    • methylenetetrahydrofolate reductase (nad(p)h)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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