Difference between revisions of "S-FORMYLGLUTATHIONE-HYDROLASE-RXN"
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(Created page with "Category:reaction == Reaction RXN66-3 == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** acetaldehyde dehydrogenase * ec-number: ** [http:/...") |
(Created page with "Category:reaction == Reaction RXN-9679 == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase ** sarcosine-dimethylglycine methyltransferase * sy...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction RXN-9679 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** sarcosine n-methyltransferase |
− | ** | + | ** sarcosine-dimethylglycine methyltransferase |
− | * | + | * synonymous: |
− | ** | + | ** sarcosine dimethylglycine n-methyltransferase |
+ | ** glycine sarcosine n-methyltransferase | ||
+ | ** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase | ||
+ | ** gsdmt | ||
+ | ** apdmt | ||
+ | ** s-adenosyl-l-methionine:sarcosine n-methyltransferase | ||
+ | ** glycine-sarcosine methyltransferase | ||
+ | ** gmt | ||
+ | ** glycine sarcosine dimethylglycine n-methyltransferase | ||
+ | ** sdmt | ||
+ | ** gsmt | ||
+ | ** apgsmt | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ11087]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ12128]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ02540]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ02539]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ12119]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ10116]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ12116]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ03081]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ18177]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ12118]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ14716]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): |
− | |||
− | |||
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-6004]], glycine betaine biosynthesis V (from glycine): |
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243] | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454] |
− | |||
− | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=sarcosine n-methyltransferase|sarcosine-dimethylglycine methyltransferase}} |
− | {{#set: | + | {{#set: synonymous=gmt|gsdmt|apgsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sdmt|glycine-sarcosine methyltransferase|glycine sarcosine n-methyltransferase|gsmt|apdmt}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=11}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome}} | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 15:01, 5 January 2021
Contents
Reaction RXN-9679
- direction:
- left-to-right
- common-name:
- sarcosine n-methyltransferase
- sarcosine-dimethylglycine methyltransferase
- synonymous:
- sarcosine dimethylglycine n-methyltransferase
- glycine sarcosine n-methyltransferase
- s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
- gsdmt
- apdmt
- s-adenosyl-l-methionine:sarcosine n-methyltransferase
- glycine-sarcosine methyltransferase
- gmt
- glycine sarcosine dimethylglycine n-methyltransferase
- sdmt
- gsmt
- apgsmt
Reaction formula
- 1 S-ADENOSYLMETHIONINE[c] + 1 SARCOSINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DIMETHYL-GLYCINE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ11087
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12128
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02540
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02539
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12119
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10116
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12116
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ03081
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ18177
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12118
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ14716
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- P541-PWY, glycine betaine biosynthesis IV (from glycine):
- 3 reactions found over 3 reactions in the full pathway
- PWY-6004, glycine betaine biosynthesis V (from glycine):
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links