Difference between revisions of "S.japonica carotenoid curated"

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(Created page with "Category:reaction == Reaction GLURS-RXN == * direction: ** left-to-right * common-name: ** glutamate-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.17 ec-6...")
(Created page with "Category:reaction == Reaction RXN-1404 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1] == Reaction formula == * 1 INDOL...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLURS-RXN ==
+
== Reaction RXN-1404 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** glutamate-trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.17 ec-6.1.1.17]
+
** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[GLT-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12903]]
+
* Gene: [[SJ14362]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07890]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02846]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate):
+
* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-581]], indole-3-acetate biosynthesis II:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack):
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23541 23541]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=45777 45777]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P47700 P47700]
 
−
** [http://www.uniprot.org/uniprot/O52914 O52914]
 
−
** [http://www.uniprot.org/uniprot/P43818 P43818]
 
−
** [http://www.uniprot.org/uniprot/O26157 O26157]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
 
−
** [http://www.uniprot.org/uniprot/O25360 O25360]
 
−
** [http://www.uniprot.org/uniprot/O51345 O51345]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
 
−
** [http://www.uniprot.org/uniprot/P96551 P96551]
 
−
** [http://www.uniprot.org/uniprot/O67271 O67271]
 
−
** [http://www.uniprot.org/uniprot/O83679 O83679]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
 
−
** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
 
−
** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
 
−
** [http://www.uniprot.org/uniprot/O84451 O84451]
 
−
** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
 
−
** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
 
−
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
 
−
** [http://www.uniprot.org/uniprot/Q58772 Q58772]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
 
−
** [http://www.uniprot.org/uniprot/P59690 P59690]
 
−
** [http://www.uniprot.org/uniprot/Q43768 Q43768]
 
−
** [http://www.uniprot.org/uniprot/Q43794 Q43794]
 
−
** [http://www.uniprot.org/uniprot/P46655 P46655]
 
−
** [http://www.uniprot.org/uniprot/P48525 P48525]
 
−
** [http://www.uniprot.org/uniprot/P75114 P75114]
 
−
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
 
−
** [http://www.uniprot.org/uniprot/P22249 P22249]
 
−
** [http://www.uniprot.org/uniprot/P22250 P22250]
 
−
** [http://www.uniprot.org/uniprot/P04805 P04805]
 
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
−
** [http://www.uniprot.org/uniprot/P15189 P15189]
 
−
** [http://www.uniprot.org/uniprot/O65253 O65253]
 
−
** [http://www.uniprot.org/uniprot/O68055 O68055]
 
−
** [http://www.uniprot.org/uniprot/O68142 O68142]
 
−
** [http://www.uniprot.org/uniprot/O86528 O86528]
 
−
** [http://www.uniprot.org/uniprot/O13775 O13775]
 
−
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
 
−
** [http://www.uniprot.org/uniprot/O82462 O82462]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamate-trna ligase}}
+
{{#set: ec-number=ec-3.5.5.1}}
−
{{#set: ec-number=ec-6.1.1.17}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 18:59, 14 January 2021

Reaction RXN-1404

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi):
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-581, indole-3-acetate biosynthesis II:
    • 5 reactions found over 12 reactions in the full pathway
  • PWYQT-4476, indole glucosinolate activation (herbivore attack):
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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