Difference between revisions of "S.japonica carotenoid curated"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] == * direction: ** reversible * common-name: ** phosphoglucose isomera...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THRESYN-RXN THRESYN-RXN] == * direction: ** left-to-right * common-name: ** threonine synthase * ec...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THRESYN-RXN THRESYN-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphoglucose isomerase
+
** threonine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.9 ec-5.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.2.3.1 ec-4.2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-glucopyranose-6-phosphate]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
+
* 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[THR]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00085]]
+
* Gene: [[SJ11569]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08179]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 21: Line 16:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[HOMOSER-THRESYN-PWY]], L-threonine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-THRESYN-PWY HOMOSER-THRESYN-PWY]
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7347]], sucrose biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7347 PWY-7347]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6981]], chitin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6981 PWY-6981]
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6992]], 1,5-anhydrofructose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6992 PWY-6992]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=UDPNAGSYN-PWY UDPNAGSYN-PWY]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5054]], D-sorbitol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5054 PWY-5054]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 75: Line 24:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11819 11819]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10841 10841]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00771 R00771]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01466 R01466]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06744 P06744]
+
** [http://www.uniprot.org/uniprot/P04990 P04990]
−
** [http://www.uniprot.org/uniprot/P28718 P28718]
+
** [http://www.uniprot.org/uniprot/Q9Y9K2 Q9Y9K2]
−
** [http://www.uniprot.org/uniprot/Q7LZP0 Q7LZP0]
+
** [http://www.uniprot.org/uniprot/O28953 O28953]
−
** [http://www.uniprot.org/uniprot/O83488 O83488]
+
** [http://www.uniprot.org/uniprot/P66902 P66902]
−
** [http://www.uniprot.org/uniprot/Q9JTW1 Q9JTW1]
+
** [http://www.uniprot.org/uniprot/O59293 O59293]
−
** [http://www.uniprot.org/uniprot/Q59000 Q59000]
+
** [http://www.uniprot.org/uniprot/O66864 O66864]
−
** [http://www.uniprot.org/uniprot/Q9PMD4 Q9PMD4]
+
** [http://www.uniprot.org/uniprot/Q9PPA8 Q9PPA8]
−
** [http://www.uniprot.org/uniprot/O25781 O25781]
+
** [http://www.uniprot.org/uniprot/O58587 O58587]
−
** [http://www.uniprot.org/uniprot/O84382 O84382]
+
** [http://www.uniprot.org/uniprot/Q9V0P1 Q9V0P1]
−
** [http://www.uniprot.org/uniprot/Q9JSS6 Q9JSS6]
+
** [http://www.uniprot.org/uniprot/Q9V190 Q9V190]
−
** [http://www.uniprot.org/uniprot/P81181 P81181]
+
** [http://www.uniprot.org/uniprot/O26354 O26354]
−
** [http://www.uniprot.org/uniprot/P08059 P08059]
+
** [http://www.uniprot.org/uniprot/O29700 O29700]
−
** [http://www.uniprot.org/uniprot/P50309 P50309]
+
** [http://www.uniprot.org/uniprot/Q9WZ16 Q9WZ16]
−
** [http://www.uniprot.org/uniprot/P13376 P13376]
+
** [http://www.uniprot.org/uniprot/Q9UZV8 Q9UZV8]
−
** [http://www.uniprot.org/uniprot/P13375 P13375]
+
** [http://www.uniprot.org/uniprot/Q9JU91 Q9JU91]
−
** [http://www.uniprot.org/uniprot/P12709 P12709]
+
** [http://www.uniprot.org/uniprot/Q9CDV8 Q9CDV8]
−
** [http://www.uniprot.org/uniprot/P0A6T1 P0A6T1]
+
** [http://www.uniprot.org/uniprot/P44503 P44503]
−
** [http://www.uniprot.org/uniprot/P06745 P06745]
+
** [http://www.uniprot.org/uniprot/Q58860 Q58860]
−
** [http://www.uniprot.org/uniprot/P13377 P13377]
+
** [http://www.uniprot.org/uniprot/O66740 O66740]
−
** [http://www.uniprot.org/uniprot/P12341 P12341]
+
** [http://www.uniprot.org/uniprot/O50114 O50114]
−
** [http://www.uniprot.org/uniprot/P18240 P18240]
+
** [http://www.uniprot.org/uniprot/Q9YBW2 Q9YBW2]
−
** [http://www.uniprot.org/uniprot/P29333 P29333]
+
** [http://www.uniprot.org/uniprot/P23669 P23669]
−
** [http://www.uniprot.org/uniprot/P34796 P34796]
+
** [http://www.uniprot.org/uniprot/P27735 P27735]
−
** [http://www.uniprot.org/uniprot/P34797 P34797]
+
** [http://www.uniprot.org/uniprot/Q00063 Q00063]
−
** [http://www.uniprot.org/uniprot/P54240 P54240]
+
** [http://www.uniprot.org/uniprot/P74193 P74193]
−
** [http://www.uniprot.org/uniprot/P54242 P54242]
+
** [http://www.uniprot.org/uniprot/P73711 P73711]
−
** [http://www.uniprot.org/uniprot/Q59088 Q59088]
+
** [http://www.uniprot.org/uniprot/P16120 P16120]
−
** [http://www.uniprot.org/uniprot/P78033 P78033]
+
** [http://www.uniprot.org/uniprot/P00934 P00934]
−
** [http://www.uniprot.org/uniprot/P52983 P52983]
+
** [http://www.uniprot.org/uniprot/P29363 P29363]
−
** [http://www.uniprot.org/uniprot/P49105 P49105]
+
** [http://www.uniprot.org/uniprot/Q9S7B5 Q9S7B5]
−
** [http://www.uniprot.org/uniprot/P42862 P42862]
+
** [http://www.uniprot.org/uniprot/P45837 P45837]
−
** [http://www.uniprot.org/uniprot/P42863 P42863]
+
** [http://www.uniprot.org/uniprot/Q42598 Q42598]
−
** [http://www.uniprot.org/uniprot/Q9SB57 Q9SB57]
 
−
** [http://www.uniprot.org/uniprot/O82058 O82058]
 
−
** [http://www.uniprot.org/uniprot/O82059 O82059]
 
−
** [http://www.uniprot.org/uniprot/O61113 O61113]
 
−
** [http://www.uniprot.org/uniprot/P78917 P78917]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC1 Q9RMC1]
 
−
** [http://www.uniprot.org/uniprot/Q9X670 Q9X670]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphoglucose isomerase}}
+
{{#set: common-name=threonine synthase}}
−
{{#set: ec-number=ec-5.3.1.9}}
+
{{#set: ec-number=ec-4.2.3.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=23}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction THRESYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • threonine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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