Difference between revisions of "SAICARSYN-RXN"

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(Created page with "Category:reaction == Reaction GLUTAMATESYN-RXN == * direction: ** left-to-right * common-name: ** l-glutamate:nadp+ oxidoreductase (transaminating) * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction XANTHINE-OXIDASE-RXN == * direction: ** left-to-right * common-name: ** xanthine oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.17.3....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTAMATESYN-RXN ==
+
== Reaction XANTHINE-OXIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-glutamate:nadp+ oxidoreductase (transaminating)
+
** xanthine oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.4.1.13 ec-1.4.1.13]
+
** [http://enzyme.expasy.org/EC/1.17.3.2 ec-1.17.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 2 [[GLT]][c] '''+''' 1 [[NADP]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[XANTHINE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[URATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20190]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ13100]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10812]]
+
* Gene: [[SJ05673]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13101]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05660]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10813]]
+
* Gene: [[SJ05668]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13095]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05674]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13098]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ04922]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLUTSYN-PWY]], L-glutamate biosynthesis I:
+
* [[PWY-6999]], theophylline degradation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[GLUTAMINEFUM-PWY]], L-glutamine degradation II:
+
* [[PWY-6538]], caffeine degradation III (bacteria, via demethylation):
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15503 15503]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21133 21133]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00114 R00114]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02107 R02107]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q05756 Q05756]
+
** [http://www.uniprot.org/uniprot/P47989 P47989]
−
** [http://www.uniprot.org/uniprot/Q05755 Q05755]
+
** [http://www.uniprot.org/uniprot/Q00519 Q00519]
−
** [http://www.uniprot.org/uniprot/Q9PJA4 Q9PJA4]
+
** [http://www.uniprot.org/uniprot/Q62637 Q62637]
−
** [http://www.uniprot.org/uniprot/Q9PJA2 Q9PJA2]
 
−
** [http://www.uniprot.org/uniprot/Q9CG25 Q9CG25]
 
−
** [http://www.uniprot.org/uniprot/Q58746 Q58746]
 
−
** [http://www.uniprot.org/uniprot/P09831 P09831]
 
−
** [http://www.uniprot.org/uniprot/Q9CG24 Q9CG24]
 
−
** [http://www.uniprot.org/uniprot/P09832 P09832]
 
−
** [http://www.uniprot.org/uniprot/P39812 P39812]
 
−
** [http://www.uniprot.org/uniprot/Q9S2Y9 Q9S2Y9]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-glutamate:nadp+ oxidoreductase (transaminating)}}
+
{{#set: common-name=xanthine oxidase}}
−
{{#set: ec-number=ec-1.4.1.13}}
+
{{#set: ec-number=ec-1.17.3.2}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=8}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}

Revision as of 11:26, 15 January 2021

Reaction XANTHINE-OXIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • xanthine oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6999, theophylline degradation:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-6538, caffeine degradation III (bacteria, via demethylation):
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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