Difference between revisions of "SAMDECARB-RXN"
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(Created page with "Category:reaction == Reaction RXN-10910 == * direction: ** left-to-right * common-name: ** normetanephrine oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3.4 ec-...") |
(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * direction: ** left-to-right * common-name: ** adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/E...") |
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(2 intermediate revisions by one other user not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction SAMDECARB-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** adenosylmethionine decarboxylase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ07458]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ16226]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[ARGSPECAT-PWY]], spermine biosynthesis: |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
+ | * [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-6834]], spermidine biosynthesis III: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR95455 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P82184 P82184] | ||
+ | ** [http://www.uniprot.org/uniprot/P21182 P21182] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6] | ||
+ | ** [http://www.uniprot.org/uniprot/P17707 P17707] | ||
+ | ** [http://www.uniprot.org/uniprot/P28918 P28918] | ||
+ | ** [http://www.uniprot.org/uniprot/P17708 P17708] | ||
+ | ** [http://www.uniprot.org/uniprot/P50243 P50243] | ||
+ | ** [http://www.uniprot.org/uniprot/P46255 P46255] | ||
+ | ** [http://www.uniprot.org/uniprot/Q04694 Q04694] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42679 Q42679] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42829 Q42829] | ||
+ | ** [http://www.uniprot.org/uniprot/P79888 P79888] | ||
+ | ** [http://www.uniprot.org/uniprot/O04009 O04009] | ||
+ | ** [http://www.uniprot.org/uniprot/O24575 O24575] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43820 Q43820] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39676 Q39676] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39677 Q39677] | ||
+ | ** [http://www.uniprot.org/uniprot/O49972 O49972] | ||
+ | ** [http://www.uniprot.org/uniprot/O65354 O65354] | ||
+ | ** [http://www.uniprot.org/uniprot/O02655 O02655] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=adenosylmethionine decarboxylase}} |
− | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-4.1.1.50}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:21, 18 March 2021
Contents
Reaction SAMDECARB-RXN
- direction:
- left-to-right
- common-name:
- adenosylmethionine decarboxylase
- ec-number:
Reaction formula
- 1 PROTON[c] + 1 S-ADENOSYLMETHIONINE[c] => 1 CARBON-DIOXIDE[c] + 1 S-ADENOSYLMETHIONINAMINE[c]
Gene(s) associated with this reaction
- Gene: SJ07458
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ16226
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- ARGSPECAT-PWY, spermine biosynthesis:
- 2 reactions found over 2 reactions in the full pathway
- BSUBPOLYAMSYN-PWY, spermidine biosynthesis I:
- 2 reactions found over 2 reactions in the full pathway
- PWY-6834, spermidine biosynthesis III:
- 2 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links