Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-77...")
 
(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * direction: ** left-to-right * common-name: ** adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(9 intermediate revisions by 4 users not shown)
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061] ==
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== Reaction SAMDECARB-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-7742]
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** left-to-right
 
* common-name:
 
* common-name:
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** bile acid biosynthesis, neutral pathway
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** adenosylmethionine decarboxylase
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== Reaction(s) found ==
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* ec-number:
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* [[2.3.1.176-RXN]]
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** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
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* [[4.2.1.107-RXN]]
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== Reaction formula ==
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* [[RXN-9847]]
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* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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* Gene: [[SJ07458]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ16226]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s)  ==
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* [[ARGSPECAT-PWY]], spermine biosynthesis:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6834]], spermidine biosynthesis III:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9794 RXN-9794]
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* METANETX-RXN : MNXR95455
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9844 RXN-9844]
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* RHEA:
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9800 RXN-9800]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTANETRIOL-26-MONOOXYGENASE-RXN CHOLESTANETRIOL-26-MONOOXYGENASE-RXN]
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* LIGAND-RXN:
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-N-CHOLOYLTRANSFERASE-RXN GLYCINE-N-CHOLOYLTRANSFERASE-RXN]
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** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9852 RXN-9852]
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* UNIPROT:
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9848 RXN-9848]
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** [http://www.uniprot.org/uniprot/P82184 P82184]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9796 RXN-9796]
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** [http://www.uniprot.org/uniprot/P21182 P21182]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9846 RXN-9846]
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** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN]
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** [http://www.uniprot.org/uniprot/P17707 P17707]
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* [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.28-RXN 6.2.1.28-RXN]
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** [http://www.uniprot.org/uniprot/P28918 P28918]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9840 RXN-9840]
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** [http://www.uniprot.org/uniprot/P17708 P17708]
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN]
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** [http://www.uniprot.org/uniprot/P50243 P50243]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9798 RXN-9798]
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** [http://www.uniprot.org/uniprot/P46255 P46255]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9851 RXN-9851]
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** [http://www.uniprot.org/uniprot/Q04694 Q04694]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.95-RXN 1.14.13.95-RXN]
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** [http://www.uniprot.org/uniprot/Q42679 Q42679]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.181-RXN 1.1.1.181-RXN]
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** [http://www.uniprot.org/uniprot/Q42829 Q42829]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9850 RXN-9850]
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** [http://www.uniprot.org/uniprot/P79888 P79888]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.40-RXN 1.2.1.40-RXN]
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** [http://www.uniprot.org/uniprot/O04009 O04009]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9842 RXN-9842]
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** [http://www.uniprot.org/uniprot/O24575 O24575]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9797 RXN-9797]
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** [http://www.uniprot.org/uniprot/Q43820 Q43820]
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* [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.29-RXN 6.2.1.29-RXN]
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** [http://www.uniprot.org/uniprot/Q39676 Q39676]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9841 RXN-9841]
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** [http://www.uniprot.org/uniprot/Q39677 Q39677]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9843 RXN-9843]
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** [http://www.uniprot.org/uniprot/O49972 O49972]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9845 RXN-9845]
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** [http://www.uniprot.org/uniprot/O65354 O65354]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9799 RXN-9799]
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** [http://www.uniprot.org/uniprot/O02655 O02655]
 
</div>
 
</div>
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{{#set: taxonomic-range=tax-7742}}
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{{#set: direction=left-to-right}}
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{{#set: common-name=bile acid biosynthesis, neutral pathway}}
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{{#set: common-name=adenosylmethionine decarboxylase}}
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{{#set: nb reaction found=3}}
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{{#set: ec-number=ec-4.1.1.50}}
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{{#set: completion rate=0.1}}
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{{#set: nb gene associated=2}}
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{{#set: nb total reaction=29}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction SAMDECARB-RXN

  • direction:
    • left-to-right
  • common-name:
    • adenosylmethionine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARGSPECAT-PWY, spermine biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • BSUBPOLYAMSYN-PWY, spermidine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6834, spermidine biosynthesis III:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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