Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-77...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN] == * direction: ** lef...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN] ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-7742 tax-7742]
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** left-to-right
 
* common-name:
 
* common-name:
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** bile acid biosynthesis, neutral pathway
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** 3-hydroxyisobutyryl-coa hydrolase
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== Reaction(s) found ==
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* ec-number:
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* [[2.3.1.176-RXN]]
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** [http://enzyme.expasy.org/EC/3.1.2.4 ec-3.1.2.4]
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* [[4.2.1.107-RXN]]
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== Reaction formula ==
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* [[RXN-9847]]
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* 1 [[CPD-12173]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-12175]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9794 RXN-9794]
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* Gene: [[SJ11169]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9844 RXN-9844]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9800 RXN-9800]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTANETRIOL-26-MONOOXYGENASE-RXN CHOLESTANETRIOL-26-MONOOXYGENASE-RXN]
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* Gene: [[SJ04418]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-N-CHOLOYLTRANSFERASE-RXN GLYCINE-N-CHOLOYLTRANSFERASE-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9852 RXN-9852]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9848 RXN-9848]
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* Gene: [[SJ03913]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9796 RXN-9796]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9846 RXN-9846]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN CHOLESTANETETRAOL-26-DEHYDROGENASE-RXN]
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* Gene: [[SJ07211]]
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* [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.28-RXN 6.2.1.28-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9840 RXN-9840]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN CHOLESTEROL-7-ALPHA-MONOOXYGENASE-RXN]
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* Gene: [[SJ14130]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9798 RXN-9798]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9851 RXN-9851]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.95-RXN 1.14.13.95-RXN]
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* Gene: [[SJ14591]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.181-RXN 1.1.1.181-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9850 RXN-9850]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.40-RXN 1.2.1.40-RXN]
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* Gene: [[SJ00040]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9842 RXN-9842]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9797 RXN-9797]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=6.2.1.29-RXN 6.2.1.29-RXN]
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* Gene: [[SJ21390]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9841 RXN-9841]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9843 RXN-9843]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9845 RXN-9845]
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* Gene: [[SJ22166]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9799 RXN-9799]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ22164]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ16590]]
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** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
</div>
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{{#set: taxonomic-range=tax-7742}}
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== Pathway(s)  ==
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{{#set: common-name=bile acid biosynthesis, neutral pathway}}
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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{{#set: nb reaction found=3}}
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** '''6''' reactions found over '''8''' reactions in the full pathway
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{{#set: completion rate=0.1}}
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== Reconstruction information  ==
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{{#set: nb total reaction=29}}
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20889 20889]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03352 R03352]
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** [http://www.genome.jp/dbget-bin/www_bget?R05064 R05064]
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{{#set: direction=left-to-right}}
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{{#set: common-name=3-hydroxyisobutyryl-coa hydrolase}}
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{{#set: ec-number=ec-3.1.2.4}}
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{{#set: nb gene associated=11}}
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{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction 3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • 3-hydroxyisobutyryl-coa hydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • VALDEG-PWY, L-valine degradation I: VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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