Difference between revisions of "SBTD D2"

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(Created page with "Category:reaction == Reaction RXN-5647 == * direction: ** left-to-right * common-name: ** phosphocholine phosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.75...")
(Created page with "Category:reaction == Reaction GLUTAMINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glutamine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-5647 ==
+
== Reaction GLUTAMINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** phosphocholine phosphatase
+
** glutamine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.75 ec-3.1.3.75]
+
** [http://enzyme.expasy.org/EC/6.1.1.18 ec-6.1.1.18]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHORYL-CHOLINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CHOLINE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[GLN-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21090]]
+
* Gene: [[SJ16362]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ22527]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21190]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3385]], choline biosynthesis I:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10493 10493]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20122 20122]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06871 R06871]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03652 R03652]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O59314 O59314]
 +
** [http://www.uniprot.org/uniprot/P43831 P43831]
 +
** [http://www.uniprot.org/uniprot/P47897 P47897]
 +
** [http://www.uniprot.org/uniprot/P14325 P14325]
 +
** [http://www.uniprot.org/uniprot/P95968 P95968]
 +
** [http://www.uniprot.org/uniprot/P13188 P13188]
 +
** [http://www.uniprot.org/uniprot/P00962 P00962]
 +
** [http://www.uniprot.org/uniprot/P52780 P52780]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=phosphocholine phosphatase}}
+
{{#set: common-name=glutamine-trna ligase}}
−
{{#set: ec-number=ec-3.1.3.75}}
+
{{#set: ec-number=ec-6.1.1.18}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction GLUTAMINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • glutamine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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