Difference between revisions of "SBTD D2"

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(Created page with "Category:reaction == Reaction GLUTAMINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** glutamine-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction TransportSeed-CPD-3 == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-3[e] '''=>''' 1.0 CPD-3[c] == Gene(s) associate...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction GLUTAMINE--TRNA-LIGASE-RXN ==
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== Reaction TransportSeed-CPD-3 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** glutamine-trna ligase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.18 ec-6.1.1.18]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[GLN-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[PPI]][c]
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* 1.0 [[CPD-3]][e] '''=>''' 1.0 [[CPD-3]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ16362]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ22527]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21190]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
 
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** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20122 20122]
 
−
* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03652 R03652]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/O59314 O59314]
 
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** [http://www.uniprot.org/uniprot/P43831 P43831]
 
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** [http://www.uniprot.org/uniprot/P47897 P47897]
 
−
** [http://www.uniprot.org/uniprot/P14325 P14325]
 
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** [http://www.uniprot.org/uniprot/P95968 P95968]
 
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** [http://www.uniprot.org/uniprot/P13188 P13188]
 
−
** [http://www.uniprot.org/uniprot/P00962 P00962]
 
−
** [http://www.uniprot.org/uniprot/P52780 P52780]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glutamine-trna ligase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-6.1.1.18}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=3}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=import_from_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 15:33, 5 January 2021

Reaction TransportSeed-CPD-3

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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