Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9951 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzy...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9951 ==
+
== Reaction SERINE--TRNA-LIGASE-RXN ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** isocitrate dehydrogenase (nadp+)
+
** l-serine:trnaser ligase (amp-forming)
−
** nadp-dependent isocitrate dehydrogenase
+
* ec-number:
−
* synonymous:
+
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
−
** idp1
 
−
** oxalosuccinate decarboxylase
 
−
** oxalsuccinic decarboxylase
 
−
** idp
 
−
** idp2
 
−
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 
−
** nadp-linked isocitrate dehydrogenase
 
−
** nadp-specific isocitrate dehydrogenase
 
−
** idh (ambiguous)
 
−
** isocitrate dehydrogenase (nadp-dependent)
 
−
** nadp+-icdh
 
−
** nadp+-linked isocitrate dehydrogenase
 
−
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 
−
** nadp-dependent isocitric dehydrogenase
 
−
** nadp+-idh
 
−
** isocitrate (nadp) dehydrogenase
 
−
** nadp isocitric dehydrogenase
 
−
** idp3
 
−
** dual-cofactor-specific isocitrate dehydrogenase
 
−
</div>
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08749]]
+
* Gene: [[SJ14143]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07311]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 37: Line 21:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR123879
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=isocitrate dehydrogenase (nadp+)|nadp-dependent isocitrate dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
−
{{#set: synonymous=nadp-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|idp2|oxalosuccinate decarboxylase|nadp+-idh|idh (ambiguous)|oxalsuccinic decarboxylase|isocitrate (nadp) dehydrogenase|idp3|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|nadp-specific isocitrate dehydrogenase|idp|nadp isocitric dehydrogenase|idp1|nadp+-linked isocitrate dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|nadp+-icdh|isocitrate dehydrogenase (nadp-dependent)|dual-cofactor-specific isocitrate dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/O51244 O51244]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/O66647 O66647]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
 +
** [http://www.uniprot.org/uniprot/O27194 O27194]
 +
** [http://www.uniprot.org/uniprot/O84734 O84734]
 +
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 +
** [http://www.uniprot.org/uniprot/P47251 P47251]
 +
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 +
** [http://www.uniprot.org/uniprot/O83653 O83653]
 +
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 +
** [http://www.uniprot.org/uniprot/P49591 P49591]
 +
** [http://www.uniprot.org/uniprot/P56458 P56458]
 +
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 +
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 +
** [http://www.uniprot.org/uniprot/P43833 P43833]
 +
** [http://www.uniprot.org/uniprot/P26636 P26636]
 +
** [http://www.uniprot.org/uniprot/P39919 P39919]
 +
** [http://www.uniprot.org/uniprot/P37464 P37464]
 +
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 +
** [http://www.uniprot.org/uniprot/P75107 P75107]
 +
** [http://www.uniprot.org/uniprot/P73201 P73201]
 +
** [http://www.uniprot.org/uniprot/O82108 O82108]
 +
** [http://www.uniprot.org/uniprot/O82110 O82110]
 +
** [http://www.uniprot.org/uniprot/O81983 O81983]
 +
** [http://www.uniprot.org/uniprot/O45887 O45887]
 +
** [http://www.uniprot.org/uniprot/O14018 O14018]
 +
** [http://www.uniprot.org/uniprot/P54221 P54221]
 +
** [http://www.uniprot.org/uniprot/P07284 P07284]
 +
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=l-serine:trnaser ligase (amp-forming)}}
 +
{{#set: ec-number=ec-6.1.1.11}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • l-serine:trnaser ligase (amp-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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