Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction NAPHTHOATE-SYN-RXN == * direction: ** left-to-right * common-name: ** 1,4-dihydroxy-2-naphthoyl-coa synthase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzy...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NAPHTHOATE-SYN-RXN ==
+
== Reaction SERINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 1,4-dihydroxy-2-naphthoyl-coa synthase
+
** l-serine:trnaser ligase (amp-forming)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.3.36 ec-4.1.3.36]
+
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-6972]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-9925]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04418]]
+
* Gene: [[SJ14143]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07311]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5837]], 2-carboxy-1,4-naphthoquinol biosynthesis:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR123879
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26563 26563]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07263 R07263]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9CHK2 Q9CHK2]
+
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
−
** [http://www.uniprot.org/uniprot/P44960 P44960]
+
** [http://www.uniprot.org/uniprot/O51244 O51244]
−
** [http://www.uniprot.org/uniprot/P0ABU0 P0ABU0]
+
** [http://www.uniprot.org/uniprot/O66647 O66647]
−
** [http://www.uniprot.org/uniprot/P23966 P23966]
+
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
−
** [http://www.uniprot.org/uniprot/Q59464 Q59464]
+
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
−
** [http://www.uniprot.org/uniprot/P73495 P73495]
+
** [http://www.uniprot.org/uniprot/O27194 O27194]
 +
** [http://www.uniprot.org/uniprot/O84734 O84734]
 +
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 +
** [http://www.uniprot.org/uniprot/P47251 P47251]
 +
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 +
** [http://www.uniprot.org/uniprot/O83653 O83653]
 +
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 +
** [http://www.uniprot.org/uniprot/P49591 P49591]
 +
** [http://www.uniprot.org/uniprot/P56458 P56458]
 +
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 +
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 +
** [http://www.uniprot.org/uniprot/P43833 P43833]
 +
** [http://www.uniprot.org/uniprot/P26636 P26636]
 +
** [http://www.uniprot.org/uniprot/P39919 P39919]
 +
** [http://www.uniprot.org/uniprot/P37464 P37464]
 +
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 +
** [http://www.uniprot.org/uniprot/P75107 P75107]
 +
** [http://www.uniprot.org/uniprot/P73201 P73201]
 +
** [http://www.uniprot.org/uniprot/O82108 O82108]
 +
** [http://www.uniprot.org/uniprot/O82110 O82110]
 +
** [http://www.uniprot.org/uniprot/O81983 O81983]
 +
** [http://www.uniprot.org/uniprot/O45887 O45887]
 +
** [http://www.uniprot.org/uniprot/O14018 O14018]
 +
** [http://www.uniprot.org/uniprot/P54221 P54221]
 +
** [http://www.uniprot.org/uniprot/P07284 P07284]
 +
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=1,4-dihydroxy-2-naphthoyl-coa synthase}}
+
{{#set: common-name=l-serine:trnaser ligase (amp-forming)}}
−
{{#set: ec-number=ec-4.1.3.36}}
+
{{#set: ec-number=ec-6.1.1.11}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • l-serine:trnaser ligase (amp-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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