Difference between revisions of "SERINE-C-PALMITOYLTRANSFERASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** serine palmitoyltransferase * ec-number: ** [http://enzy...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892] ==
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== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** thiazole biosynthesis i (facultative anaerobic bacteria)
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** serine palmitoyltransferase
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== Reaction(s) found ==
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* ec-number:
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* [[DXS-RXN]]
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** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
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* [[RXN-11319]]
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== Reaction formula ==
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* [[RXN-14382]]
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* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
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* [[RXN0-308]]
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== Gene(s) associated with this reaction  ==
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* [[THIAZOLSYN2-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) not found ==
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* Gene: [[SJ01689]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9788 RXN-9788]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9789 RXN-9789]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: taxonomic-range=tax-2}}
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** Category: [[orthology]]
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{{#set: common-name=thiazole biosynthesis i (facultative anaerobic bacteria)}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=5}}
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* Gene: [[SJ05058]]
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{{#set: completion rate=0.71}}
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** Category: [[annotation]]
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{{#set: nb total reaction=7}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13300]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ01690]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s) ==
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* [[PWY3DJ-12]], ceramide de novo biosynthesis:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
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** '''4''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5129]], sphingolipid biosynthesis (plants):
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** '''4''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* METANETX-RXN : MNXR104347
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P25045 P25045]
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** [http://www.uniprot.org/uniprot/O15270 O15270]
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** [http://www.uniprot.org/uniprot/P48241 P48241]
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
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** [http://www.uniprot.org/uniprot/P40970 P40970]
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
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{{#set: direction=left-to-right}}
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{{#set: common-name=serine palmitoyltransferase}}
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{{#set: ec-number=ec-2.3.1.50}}
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{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • serine palmitoyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3DJ-12, ceramide de novo biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5129, sphingolipid biosynthesis (plants):
    • 4 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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