Difference between revisions of "SHIKIMATE-5-DEHYDROGENASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-12...")
(Created page with "Category:reaction == Reaction SHIKIMATE-5-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** shikimate dehydrogenase * ec-number: ** [http://enzyme.expas...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380] ==
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== Reaction SHIKIMATE-5-DEHYDROGENASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-1239]
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** left-to-right
 
* common-name:
 
* common-name:
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** biotin biosynthesis from 8-amino-7-oxononanoate ii
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** shikimate dehydrogenase
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== Reaction(s) found ==
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* ec-number:
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* [[2.8.1.6-RXN]]
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** [http://enzyme.expasy.org/EC/1.1.1.25 ec-1.1.1.25]
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* [[DETHIOBIOTIN-SYN-RXN]]
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== Reaction formula ==
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== Reaction(s) not found ==
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* 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14930 RXN-14930]
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== Gene(s) associated with this reaction  ==
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{{#set: taxonomic-range=tax-1239}}
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* Gene: [[SJ10493]]
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{{#set: common-name=biotin biosynthesis from 8-amino-7-oxononanoate ii}}
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** Category: [[annotation]]
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{{#set: nb reaction found=2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: completion rate=0.67}}
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** Category: [[orthology]]
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{{#set: nb total reaction=3}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
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** '''6''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR104378
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17739 17739]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/Q58484 Q58484]
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** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
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** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
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** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
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** [http://www.uniprot.org/uniprot/Q44606 Q44606]
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** [http://www.uniprot.org/uniprot/Q44608 Q44608]
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** [http://www.uniprot.org/uniprot/Q44609 Q44609]
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** [http://www.uniprot.org/uniprot/Q44610 Q44610]
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** [http://www.uniprot.org/uniprot/Q44611 Q44611]
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** [http://www.uniprot.org/uniprot/Q44612 Q44612]
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** [http://www.uniprot.org/uniprot/P15770 P15770]
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** [http://www.uniprot.org/uniprot/Q42947 Q42947]
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** [http://www.uniprot.org/uniprot/O65917 O65917]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=shikimate dehydrogenase}}
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{{#set: ec-number=ec-1.1.1.25}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • shikimate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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