Difference between revisions of "SHIKIMATE-KINASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN] == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glu...")
(Created page with "Category:reaction == Reaction SHIKIMATE-KINASE-RXN == * direction: ** reversible * common-name: ** shikimate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.71 e...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.2.30-RXN 2.8.2.30-RXN] ==
+
== Reaction SHIKIMATE-KINASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** [heparan sulfate]-glucosamine 3-o-sulfotransferase
+
** shikimate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.8.2.30 ec-2.8.2.30]
+
** [http://enzyme.expasy.org/EC/2.7.1.71 ec-2.7.1.71]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HEPARIN-GLUCOSAMINE]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[HEPARIN-GLUCOSAMINE-3-O-SULFATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[SHIKIMATE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SHIKIMATE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07694]]
+
* Gene: [[SJ04949]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00944]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17721]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05909]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
−
** '''7''' reactions found over '''13''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104379
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13124 13124]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05798 R05798]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02412 R02412]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: common-name=[heparan sulfate]-glucosamine 3-o-sulfotransferase}}
+
** [http://www.uniprot.org/uniprot/P0A6D7 P0A6D7]
−
{{#set: ec-number=ec-2.8.2.30}}
+
** [http://www.uniprot.org/uniprot/Q9PIB5 Q9PIB5]
 +
** [http://www.uniprot.org/uniprot/P07547 P07547]
 +
** [http://www.uniprot.org/uniprot/P08566 P08566]
 +
** [http://www.uniprot.org/uniprot/P43880 P43880]
 +
** [http://www.uniprot.org/uniprot/P63600 P63600]
 +
** [http://www.uniprot.org/uniprot/Q9CEU1 Q9CEU1]
 +
** [http://www.uniprot.org/uniprot/P37944 P37944]
 +
** [http://www.uniprot.org/uniprot/P0A6E1 P0A6E1]
 +
** [http://www.uniprot.org/uniprot/P10880 P10880]
 +
** [http://www.uniprot.org/uniprot/Q00497 Q00497]
 +
** [http://www.uniprot.org/uniprot/P34003 P34003]
 +
** [http://www.uniprot.org/uniprot/P43906 P43906]
 +
** [http://www.uniprot.org/uniprot/P72796 P72796]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=shikimate kinase}}
 +
{{#set: ec-number=ec-2.7.1.71}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction SHIKIMATE-KINASE-RXN

  • direction:
    • reversible
  • common-name:
    • shikimate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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