Difference between revisions of "SIROHEME"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1132 RXN0-1132] == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (nad...")
(Created page with "Category:metabolite == Metabolite SIROHEME == * common-name: ** siroheme * smiles: ** cc4(cc(=o)[o-])(c(ccc(=o)[o-])c6(=cc8(=c(cc([o-])=o)c(ccc(=o)[o-])=c7(n([fe--]25([n+]...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1132 RXN0-1132] ==
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== Metabolite SIROHEME ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** pyruvate dehydrogenase (nad+)
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** siroheme
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** lipoate acetyltransferase n6-(dihydrolipoyl)lysine:nad+ oxidoreductase
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* smiles:
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* ec-number:
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** cc4(cc(=o)[o-])(c(ccc(=o)[o-])c6(=cc8(=c(cc([o-])=o)c(ccc(=o)[o-])=c7(n([fe--]25([n+]1(c(c(ccc([o-])=o)=c(cc(=o)[o-])c=1c=c3(c(c)(cc(=o)[o-])c(ccc(=o)[o-])c(n23)=cc4=[n+]56))=c7)))8))))
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** [http://enzyme.expasy.org/EC/1.8.1.4 ec-1.8.1.4]
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* inchi-key:
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== Reaction formula ==
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** dlkssihhlynikn-qiiswyhfsa-d
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* 1 [[NAD]][c] '''+''' 1 [[Pyruvate-dehydrogenase-dihydrolipoate]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pyruvate-dehydrogenase-lipoate]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 908.611
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) known to consume the compound ==
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* Gene: [[SJ01042]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[SIROHEME-FERROCHELAT-RXN]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ06474]]
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{{#set: common-name=siroheme}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=dlkssihhlynikn-qiiswyhfsa-d}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: molecular-weight=908.611}}
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10661]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ00971]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ13629]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ03718]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA: [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEHYD-PWY PYRUVDEHYD-PWY]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=lipoate acetyltransferase n6-(dihydrolipoyl)lysine:nad+ oxidoreductase|pyruvate dehydrogenase (nad+)}}
 
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{{#set: ec-number=ec-1.8.1.4}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:16, 18 March 2021

Metabolite SIROHEME

  • common-name:
    • siroheme
  • smiles:
    • cc4(cc(=o)[o-])(c(ccc(=o)[o-])c6(=cc8(=c(cc([o-])=o)c(ccc(=o)[o-])=c7(n([fe--]25([n+]1(c(c(ccc([o-])=o)=c(cc(=o)[o-])c=1c=c3(c(c)(cc(=o)[o-])c(ccc(=o)[o-])c(n23)=cc4=[n+]56))=c7)))8))))
  • inchi-key:
    • dlkssihhlynikn-qiiswyhfsa-d
  • molecular-weight:
    • 908.611

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SIROHEME&oldid=139231"