Difference between revisions of "SJ00005"

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(Created page with "Category:gene == Gene SJ20270 == * transcription-direction: ** positive * right-end-position: ** 45969 * left-end-position: ** 36451 * centisome-position: ** 17.362911...")
(Created page with "Category:gene == Gene SJ00005 == * transcription-direction: ** negative * right-end-position: ** 172110 * left-end-position: ** 158699 * centisome-position: ** 10.802795...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20270 ==
+
== Gene SJ00005 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 45969
+
** 172110
 
* left-end-position:
 
* left-end-position:
−
** 36451
+
** 158699
 
* centisome-position:
 
* centisome-position:
−
** 17.362911    
+
** 10.802795    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.6.3.44-RXN]]
+
* [[2.3.1.179-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ATPASE-RXN]]
+
* [[2.3.1.41-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12195]]
+
* [[3-OXOACYL-ACP-SYNTH-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-12196]]
+
* [[RXN-10059]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-5462]]
+
* [[RXN-10654]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[TRANS-RXN-311]]
+
* [[RXN-10658]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11474]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11479]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16615]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16621]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16625]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16629]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8391]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9516]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9523]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9527]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9531]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9535]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9539]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9632]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9648]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9650]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9651]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9652]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9653]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9654]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN0-2141]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN1G-368]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN1G-445]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN1G-460]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN1G-499]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN3O-1803]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6545]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-5973]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5966]]
 +
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-5965]]
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]]
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[FASYN-ELONG-PWY]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6113]]
 +
** '''8''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''26''' reactions found over '''205''' reactions in the full pathway
 +
* [[PWY-6282]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7210]]
+
* [[PWY-6519]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[PWY-7664]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''13''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[PWY-7663]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-5367]]
−
{{#set: right-end-position=45969}}
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
{{#set: left-end-position=36451}}
+
* [[PWY-5971]]
−
{{#set: centisome-position=17.362911   }}
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5994]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=172110}}
 +
{{#set: left-end-position=158699}}
 +
{{#set: centisome-position=10.802795   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=33}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=19}}

Latest revision as of 11:08, 18 March 2021

Gene SJ00005

  • transcription-direction:
    • negative
  • right-end-position:
    • 172110
  • left-end-position:
    • 158699
  • centisome-position:
    • 10.802795

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5973
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over n.a reactions in the full pathway
  • PWY-5965
    • 1 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 8 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 26 reactions found over 205 reactions in the full pathway
  • PWY-6282
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ00005&oldid=135376"