Difference between revisions of "SJ00045"

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(Created page with "Category:gene == Gene SJ03985 == * transcription-direction: ** negative * right-end-position: ** 84816 * left-end-position: ** 84280 * centisome-position: ** 74.00838...")
(Created page with "Category:gene == Gene SJ00045 == * transcription-direction: ** positive * right-end-position: ** 706887 * left-end-position: ** 685451 * centisome-position: ** 46.659313...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03985 ==
+
== Gene SJ00045 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 84816
+
** 706887
 
* left-end-position:
 
* left-end-position:
−
** 84280
+
** 685451
 
* centisome-position:
 
* centisome-position:
−
** 74.00838    
+
** 46.659313    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RNA-DIRECTED-DNA-POLYMERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[CHORISMATEMUT-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PPDH]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PREPHENATE-DEHYDROGENASE-NADP+-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[PREPHENATEDEHYDRAT-RXN]]
−
{{#set: right-end-position=84816}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=84280}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=74.00838   }}
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[PREPHENATEDEHYDROG-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-5682]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
* [[PWY-3461]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6120]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PHESYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7626]]
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-3462]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[TYRSYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6627]]
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-7432]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7303]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=706887}}
 +
{{#set: left-end-position=685451}}
 +
{{#set: centisome-position=46.659313   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=9}}

Latest revision as of 11:00, 18 March 2021

Gene SJ00045

  • transcription-direction:
    • positive
  • right-end-position:
    • 706887
  • left-end-position:
    • 685451
  • centisome-position:
    • 46.659313

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-3461
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6120
    • 2 reactions found over 3 reactions in the full pathway
  • PHESYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7626
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-3462
    • 2 reactions found over 3 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6627
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-7303
    • 1 reactions found over 4 reactions in the full pathway




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