Difference between revisions of "SJ00085"

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(Created page with "Category:gene == Gene SJ05117 == * transcription-direction: ** positive * right-end-position: ** 17078 * left-end-position: ** 11895 * centisome-position: ** 12.326552...")
(Created page with "Category:gene == Gene SJ00085 == * transcription-direction: ** negative * right-end-position: ** 361531 * left-end-position: ** 316663 * centisome-position: ** 28.291162...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05117 ==
+
== Gene SJ00085 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 17078
+
** 361531
 
* left-end-position:
 
* left-end-position:
−
** 11895
+
** 316663
 
* centisome-position:
 
* centisome-position:
−
** 12.326552    
+
** 28.291162    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[3.1.3.16-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[G6PI]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIA]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIAh]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIB]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIBh]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGLUCISOM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
</div>
−
{{#set: transcription-direction=positive}}
+
== Pathway(s) associated ==
−
{{#set: right-end-position=17078}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: left-end-position=11895}}
+
* [[PWY-6142]]
−
{{#set: centisome-position=12.326552   }}
+
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[SUCSYN-PWY]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5514]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7385]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3801]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-621]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7347]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5384]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5659]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[RUMP-PWY]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6981]]
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6992]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[UDPNAGSYN-PWY]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P124-PWY]]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-622]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5054]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7238]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=361531}}
 +
{{#set: left-end-position=316663}}
 +
{{#set: centisome-position=28.291162   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=7}}
 +
{{#set: nb pathway associated=23}}

Latest revision as of 11:01, 18 March 2021

Gene SJ00085

  • transcription-direction:
    • negative
  • right-end-position:
    • 361531
  • left-end-position:
    • 316663
  • centisome-position:
    • 28.291162

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5514
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7385
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-621
    • 3 reactions found over 4 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-7347
    • 1 reactions found over 3 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5659
    • 3 reactions found over 4 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6981
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-6992
    • 4 reactions found over 5 reactions in the full pathway
  • UDPNAGSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7238
    • 5 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ00085&oldid=132169"