Difference between revisions of "SJ00173"
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(Created page with "Category:gene == Gene SJ21618 == * transcription-direction: ** positive * right-end-position: ** 63595 * left-end-position: ** 26274 * centisome-position: ** 13.904971...") |
(Created page with "Category:gene == Gene SJ00173 == * transcription-direction: ** negative * right-end-position: ** 60261 * left-end-position: ** 46978 * centisome-position: ** 27.521765...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ00173 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 60261 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 46978 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 27.521765 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | * [[FPPS]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[FPPSYN-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[GPPSYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | {{#set: transcription-direction= | + | == Pathway(s) associated == |
− | {{#set: right-end-position= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: left-end-position= | + | * [[PWY-6859]] |
− | {{#set: centisome-position= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | {{#set: organism associated=S. | + | * [[PWY-7736]] |
− | {{#set: nb reaction associated= | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PWY-7102]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7721]] | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5123]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6383]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7410]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5122]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-7141]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7659]] | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7709]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7182]] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: right-end-position=60261}} | ||
+ | {{#set: left-end-position=46978}} | ||
+ | {{#set: centisome-position=27.521765 }} | ||
+ | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
+ | {{#set: nb reaction associated=3}} | ||
+ | {{#set: nb pathway associated=12}} |
Latest revision as of 11:02, 18 March 2021
Contents
Gene SJ00173
- transcription-direction:
- negative
- right-end-position:
- 60261
- left-end-position:
- 46978
- centisome-position:
- 27.521765
Organism(s) associated with this gene
Reaction(s) associated
- FPPS
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- FPPSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GPPSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6859
- 3 reactions found over 4 reactions in the full pathway
- PWY-7736
- 3 reactions found over 8 reactions in the full pathway
- PWY-7102
- 3 reactions found over 6 reactions in the full pathway
- PWY-7721
- 2 reactions found over 4 reactions in the full pathway
- PWY-5123
- 3 reactions found over 3 reactions in the full pathway
- PWY-6383
- 2 reactions found over 5 reactions in the full pathway
- PWY-7410
- 1 reactions found over 4 reactions in the full pathway
- PWY-5122
- 1 reactions found over 1 reactions in the full pathway
- PWY-7141
- 1 reactions found over 2 reactions in the full pathway
- PWY-7659
- 1 reactions found over 9 reactions in the full pathway
- PWY-7709
- 1 reactions found over 2 reactions in the full pathway
- PWY-7182
- 1 reactions found over 2 reactions in the full pathway