Difference between revisions of "SJ00407"
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(Created page with "Category:gene == Gene SJ10371 == * transcription-direction: ** negative * right-end-position: ** 49889 * left-end-position: ** 30389 * centisome-position: ** 3.7562172...") |
(Created page with "Category:gene == Gene SJ00407 == * transcription-direction: ** positive * right-end-position: ** 36681 * left-end-position: ** 20437 * centisome-position: ** 3.5989377...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ00407 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 36681 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 20437 |
* centisome-position: | * centisome-position: | ||
| − | ** 3. | + | ** 3.5989377 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[1.5.1.20-RXN]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[MTHFO]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[MTHFO_LPAREN_nadp_RPAREN_]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[1CMET2-PWY]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| − | {{#set: transcription-direction= | + | * [[PWY-3841]] |
| − | {{#set: right-end-position= | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-2201]] |
| − | {{#set: centisome-position=3. | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
| + | * [[CODH-PWY]] | ||
| + | ** '''4''' reactions found over '''10''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=36681}} | ||
| + | {{#set: left-end-position=20437}} | ||
| + | {{#set: centisome-position=3.5989377 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
{{#set: nb pathway associated=4}} | {{#set: nb pathway associated=4}} | ||
Latest revision as of 11:08, 18 March 2021
Contents
Gene SJ00407
- transcription-direction:
- positive
- right-end-position:
- 36681
- left-end-position:
- 20437
- centisome-position:
- 3.5989377
Organism(s) associated with this gene
Reaction(s) associated
- 1.5.1.20-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- MTHFO
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- MTHFO_LPAREN_nadp_RPAREN_
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-2201
- 9 reactions found over 10 reactions in the full pathway
- CODH-PWY
- 4 reactions found over 10 reactions in the full pathway
