Difference between revisions of "SJ00485"

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(Created page with "Category:gene == Gene SJ12479 == * transcription-direction: ** positive * right-end-position: ** 332956 * left-end-position: ** 325494 * centisome-position: ** 43.429314...")
 
(Created page with "Category:gene == Gene SJ00485 == * transcription-direction: ** positive * right-end-position: ** 118882 * left-end-position: ** 102950 * centisome-position: ** 61.840748...")
 
(9 intermediate revisions by 3 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12479 ==
+
== Gene SJ00485 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 332956
+
** 118882
 
* left-end-position:
 
* left-end-position:
−
** 325494
+
** 102950
 
* centisome-position:
 
* centisome-position:
−
** 43.429314    
+
** 61.840748    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[F16ALDOLASE-RXN]]
+
* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[BIOTIN-CARBOXYL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[PYRUVATE-CARBOXYLASE-RXN]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[FBA_]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-8631]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SEDOBISALDOL-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[CALVIN-PWY]]
+
* [[PWY-7388]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
* [[GLUCONEO-PWY]]
+
* [[PWY-6679]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7385]]
+
* [[PWY0-1264]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[P341-PWY]]
+
* [[PWY-5744]]
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
* [[GLYCOLYSIS]]
+
* [[PWY-5743]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]]
+
* [[PWY-5789]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''8''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5750]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY66-399]]
 
* [[PWY66-399]]
 
** '''11''' reactions found over '''12''' reactions in the full pathway
 
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-1042]]
+
* [[PWY-6146]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''2''' reactions in the full pathway
−
* [[SUCSYN-PWY]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[P185-PWY]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1861]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5484]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
 
* [[PWY-6142]]
 
* [[PWY-6142]]
 
** '''10''' reactions found over '''13''' reactions in the full pathway
 
** '''10''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY66-373]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY0-1517]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=332956}}
+
{{#set: right-end-position=118882}}
−
{{#set: left-end-position=325494}}
+
{{#set: left-end-position=102950}}
−
{{#set: centisome-position=43.429314   }}
+
{{#set: centisome-position=61.840748   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=15}}
+
{{#set: nb pathway associated=11}}

Latest revision as of 11:09, 18 March 2021

Gene SJ00485

  • transcription-direction:
    • positive
  • right-end-position:
    • 118882
  • left-end-position:
    • 102950
  • centisome-position:
    • 61.840748

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-6679
    • 1 reactions found over 9 reactions in the full pathway
  • PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-5750
    • 3 reactions found over 2 reactions in the full pathway
  • P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6146
    • 9 reactions found over 2 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ00485&oldid=136037"