Difference between revisions of "SJ00780"
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(Created page with "Category:gene == Gene SJ07890 == * transcription-direction: ** negative * right-end-position: ** 27356 * left-end-position: ** 1069 * centisome-position: ** 1.7597576...") |
(Created page with "Category:gene == Gene SJ00780 == * transcription-direction: ** positive * right-end-position: ** 42185 * left-end-position: ** 15261 * centisome-position: ** 9.450237...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ00780 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 42185 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 15261 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 9.450237 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[1.2.1.18-RXN]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[1.2.1.27-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[ | + | * [[RXN-11213]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | * [[RXN- | + | * [[RXN-2902]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-9958]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-5642]] |
| − | ** '''6''' reactions found over ''' | + | ** '''1''' reactions found over '''7''' reactions in the full pathway |
| − | * [[ | + | * [[VALDEG-PWY]] |
| − | ** ''' | + | ** '''6''' reactions found over '''8''' reactions in the full pathway |
| − | * [[PWY- | + | * [[BETA-ALA-DEGRADATION-I-PWY]] |
| − | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-7574]] |
| − | {{#set: right-end-position= | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[P562-PWY]] |
| − | {{#set: centisome-position= | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
| + | * [[PWY-1781]] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-6373]] | ||
| + | ** '''1''' reactions found over '''5''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=42185}} | ||
| + | {{#set: left-end-position=15261}} | ||
| + | {{#set: centisome-position=9.450237 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Latest revision as of 11:06, 18 March 2021
Contents
Gene SJ00780
- transcription-direction:
- positive
- right-end-position:
- 42185
- left-end-position:
- 15261
- centisome-position:
- 9.450237
Organism(s) associated with this gene
Reaction(s) associated
- 1.2.1.18-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 1.2.1.27-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-11213
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-2902
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-9958
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5642
- 1 reactions found over 7 reactions in the full pathway
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- BETA-ALA-DEGRADATION-I-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-7574
- 3 reactions found over 5 reactions in the full pathway
- P562-PWY
- 2 reactions found over 7 reactions in the full pathway
- PWY-1781
- 1 reactions found over 2 reactions in the full pathway
- PWY-6373
- 1 reactions found over 5 reactions in the full pathway
