Difference between revisions of "SJ00780"

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(Created page with "Category:gene == Gene SJ05741 == * transcription-direction: ** negative * right-end-position: ** 113957 * left-end-position: ** 100900 * centisome-position: ** 20.61603...")
 
(Created page with "Category:gene == Gene SJ00780 == * transcription-direction: ** positive * right-end-position: ** 42185 * left-end-position: ** 15261 * centisome-position: ** 9.450237...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05741 ==
+
== Gene SJ00780 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 113957
+
** 42185
 
* left-end-position:
 
* left-end-position:
−
** 100900
+
** 15261
 
* centisome-position:
 
* centisome-position:
−
** 20.61603    
+
** 9.450237    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[1.2.1.18-RXN]]
−
* [[3.2.1.21-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[3.2.1.58-RXN]]
+
* [[1.2.1.27-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10769]]
+
* [[RXN-11213]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10773]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-2902]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9958]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13602]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13603]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-14179]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-5341]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8036]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9674]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6788]]
+
* [[PWY-5642]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7091]]
+
* [[VALDEG-PWY]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7092]]
+
* [[BETA-ALA-DEGRADATION-I-PWY]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-3121]]
+
* [[PWY-7574]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[P562-PWY]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-1781]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5176]]
+
* [[PWY-6373]]
 
** '''1''' reactions found over '''5''' reactions in the full pathway
 
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6002]]
+
{{#set: transcription-direction=positive}}
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
{{#set: right-end-position=42185}}
−
{{#set: transcription-direction=negative}}
+
{{#set: left-end-position=15261}}
−
{{#set: right-end-position=113957}}
+
{{#set: centisome-position=9.450237   }}
−
{{#set: left-end-position=100900}}
 
−
{{#set: centisome-position=20.61603   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=10}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=7}}

Latest revision as of 11:06, 18 March 2021

Gene SJ00780

  • transcription-direction:
    • positive
  • right-end-position:
    • 42185
  • left-end-position:
    • 15261
  • centisome-position:
    • 9.450237

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5642
    • 1 reactions found over 7 reactions in the full pathway
  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • BETA-ALA-DEGRADATION-I-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7574
    • 3 reactions found over 5 reactions in the full pathway
  • P562-PWY
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-1781
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6373
    • 1 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ00780&oldid=134512"