Difference between revisions of "SJ01009"

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(Created page with "Category:gene == Gene SJ11668 == * transcription-direction: ** negative * right-end-position: ** 165318 * left-end-position: ** 89669 * centisome-position: ** 11.505244...")
(Created page with "Category:gene == Gene SJ18541 == * transcription-direction: ** positive * right-end-position: ** 145855 * left-end-position: ** 135008 * centisome-position: ** 55.630047...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11668 ==
+
== Gene SJ18541 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 165318
+
** 145855
 
* left-end-position:
 
* left-end-position:
−
** 89669
+
** 135008
 
* centisome-position:
 
* centisome-position:
−
** 11.505244    
+
** 55.630047    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[RXN-10462]]
+
* [[ASPCARBTRANS-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13805]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-1381]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-15045]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16024]]
+
* [[ORNCARBAMTRANSFER-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16117]]
+
* [[RXN-13482]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-17016]]
+
* [[RXN-9]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-17017]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-17018]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY0-1319]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-5686]]
−
* [[TRIGLSYN-PWY]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
* [[PWY-7790]]
−
* [[PWY-5667]]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7791]]
−
* [[PWY-7411]]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-4984]]
−
* [[PWY-7587]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[CITRULLINE-DEG-PWY]]
−
* [[PWY-6453]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
* [[ARGSYNBSUB-PWY]]
−
{{#set: transcription-direction=negative}}
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
{{#set: right-end-position=165318}}
+
* [[PWY-7400]]
−
{{#set: left-end-position=89669}}
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
{{#set: centisome-position=11.505244   }}
+
* [[ARGSYN-PWY]]
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4981]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=145855}}
 +
{{#set: left-end-position=135008}}
 +
{{#set: centisome-position=55.630047   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=11}}

Revision as of 13:00, 14 January 2021

Gene SJ18541

  • transcription-direction:
    • positive
  • right-end-position:
    • 145855
  • left-end-position:
    • 135008
  • centisome-position:
    • 55.630047

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-4981
    • 3 reactions found over 6 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-5
    • 3 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01009&oldid=81142"