Difference between revisions of "SJ01042"

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(Created page with "Category:gene == Gene SJ12510 == * transcription-direction: ** negative * right-end-position: ** 164288 * left-end-position: ** 135322 * centisome-position: ** 37.82702...")
(Created page with "Category:gene == Gene SJ09463 == * transcription-direction: ** negative * right-end-position: ** 413302 * left-end-position: ** 403350 * centisome-position: ** 97.07815...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12510 ==
+
== Gene SJ09463 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 164288
+
** 413302
 
* left-end-position:
 
* left-end-position:
−
** 135322
+
** 403350
 
* centisome-position:
 
* centisome-position:
−
** 37.82702    
+
** 97.07815    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CYCLOEUCALENOL-CYCLOISOMERASE-RXN]]
−
* [[ADENYL-KIN-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PGCM]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PGMTh]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PHOSPHOGLUCMUT-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14456]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16997]]
+
* [[RXN11876]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[reaction_creator_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.)
−
* [[RXN-16998]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7155]]
−
* [[PWY-7219]]
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-2541]]
−
* [[PWY-6737]]
+
** '''11''' reactions found over '''35''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-8191]]
−
* [[PWY-7238]]
+
** '''15''' reactions found over '''n.a''' reactions in the full pathway
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLYCOGENSYNTH-PWY]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7900]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6731]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5941]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-622]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6317]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-2723]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3801]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7343]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5940]]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7902]]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5384]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5661]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-422]]
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
</div>
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=164288}}
+
{{#set: right-end-position=413302}}
−
{{#set: left-end-position=135322}}
+
{{#set: left-end-position=403350}}
−
{{#set: centisome-position=37.82702   }}
+
{{#set: centisome-position=97.07815   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=3}}

Revision as of 13:05, 14 January 2021

Gene SJ09463

  • transcription-direction:
    • negative
  • right-end-position:
    • 413302
  • left-end-position:
    • 403350
  • centisome-position:
    • 97.07815

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7155
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-2541
    • 11 reactions found over 35 reactions in the full pathway
  • PWY-8191
    • 15 reactions found over n.a reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01042&oldid=83707"