Difference between revisions of "SJ01133"

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(Created page with "Category:gene == Gene SJ10129 == * transcription-direction: ** positive * right-end-position: ** 15414 * left-end-position: ** 1247 * centisome-position: ** 3.7868207...")
(Created page with "Category:gene == Gene SJ15937 == * transcription-direction: ** negative * right-end-position: ** 97175 * left-end-position: ** 85900 * centisome-position: ** 29.683023...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ10129 ==
+
== Gene SJ15937 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 15414
+
** 97175
 
* left-end-position:
 
* left-end-position:
−
** 1247
+
** 85900
 
* centisome-position:
 
* centisome-position:
−
** 3.7868207    
+
** 29.683023    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ADENYLATECYC-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ACSERLY-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=positive}}
+
* [[CYSTATHIONINE-BETA-SYNTHASE-RXN]]
−
{{#set: right-end-position=15414}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=1247}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=3.7868207   }}
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[NITRITE-REDUCTASE-CYTOCHROME-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12726]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15838]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SULFOCYS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[CYSTSYN-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[HOMOCYSDEGR-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-I9]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-801]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[P303-PWY]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6748]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6523]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7084]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6936]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[DENITRIFICATION-PWY]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7870]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=97175}}
 +
{{#set: left-end-position=85900}}
 +
{{#set: centisome-position=29.683023   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=11}}

Revision as of 18:46, 14 January 2021

Gene SJ15937

  • transcription-direction:
    • negative
  • right-end-position:
    • 97175
  • left-end-position:
    • 85900
  • centisome-position:
    • 29.683023

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • HOMOCYSDEGR-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-I9
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801
    • 3 reactions found over 4 reactions in the full pathway
  • P303-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6748
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6523
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7084
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6936
    • 5 reactions found over 5 reactions in the full pathway
  • DENITRIFICATION-PWY
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7870
    • 2 reactions found over 4 reactions in the full pathway




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