Difference between revisions of "SJ01234"

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(Created page with "Category:gene == Gene SJ05483 == * transcription-direction: ** positive * right-end-position: ** 473424 * left-end-position: ** 461375 * centisome-position: ** 93.11716...")
(Created page with "Category:gene == Gene SJ01234 == * transcription-direction: ** negative * right-end-position: ** 248214 * left-end-position: ** 236690 * centisome-position: ** 42.771072...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05483 ==
+
== Gene SJ01234 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 473424
+
** 248214
 
* left-end-position:
 
* left-end-position:
−
** 461375
+
** 236690
 
* centisome-position:
 
* centisome-position:
−
** 93.11716    
+
** 42.771072    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GPPSYN-RXN]]
−
* [[1.14.19.3-RXN]]
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11680]]
+
* [[RXN-14929]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11681]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11682]]
+
* [[RXN-2541]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13426]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16065]]
+
== Pathway(s) associated ==
−
** Category: [[orthology]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[PWY-6383]]
−
* [[RXN-16132]]
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PWY-7410]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[RXN-17112]]
+
* [[PWY-7102]]
−
** Category: [[orthology]]
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[PWY-6859]]
−
* [[RXN-8347]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-7736]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5122]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7182]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7436]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-1422]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=negative}}
−
* [[PWY-6000]]
+
{{#set: right-end-position=248214}}
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
{{#set: left-end-position=236690}}
−
* [[PWY-6603]]
+
{{#set: centisome-position=42.771072   }}
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY-5353]]
+
{{#set: nb reaction associated=3}}
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
{{#set: nb pathway associated=13}}
−
* [[PWY-7049]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7606]]
 
−
** '''8''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-7726]]
 
−
** '''8''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6958]]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=473424}}
 
−
{{#set: left-end-position=461375}}
 
−
{{#set: centisome-position=93.11716   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=9}}
 
−
{{#set: nb pathway associated=7}}
 

Latest revision as of 11:07, 18 March 2021

Gene SJ01234

  • transcription-direction:
    • negative
  • right-end-position:
    • 248214
  • left-end-position:
    • 236690
  • centisome-position:
    • 42.771072

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7436
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-1422
    • 5 reactions found over 7 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01234&oldid=134950"