Difference between revisions of "SJ01523"

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(Created page with "Category:gene == Gene SJ17851 == * transcription-direction: ** negative * right-end-position: ** 461676 * left-end-position: ** 422006 * centisome-position: ** 63.376446...")
(Created page with "Category:gene == Gene SJ12148 == * transcription-direction: ** positive * right-end-position: ** 113423 * left-end-position: ** 106581 * centisome-position: ** 29.480053...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ17851 ==
+
== Gene SJ12148 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 461676
+
** 113423
 
* left-end-position:
 
* left-end-position:
−
** 422006
+
** 106581
 
* centisome-position:
 
* centisome-position:
−
** 63.376446    
+
** 29.480053    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CDPDIGLYSYN-RXN]]
−
* [[ASPCARBTRANS-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[CARBPSYN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[DALADALALIG-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DIHYDROOROT-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[GLUTAMIN-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13202]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14196]]
+
* [[DIACYLGLYKIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12959]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16909]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-15091]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16910]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5515]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5981]]
−
* [[PWY-5686]]
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY0-1319]]
−
* [[PWY-7790]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-5667]]
−
* [[PWY-7791]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7817]]
−
* [[PWY-7400]]
+
** '''6''' reactions found over '''16''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7039]]
−
* [[ARGSYN-PWY]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
* [[TRIGLSYN-PWY]]
−
* [[ARGSYNBSUB-PWY]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7420]]
−
* [[PWY-5154]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[PWY-7953]]
+
{{#set: right-end-position=113423}}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: left-end-position=106581}}
−
* [[PWY-6386]]
+
{{#set: centisome-position=29.480053   }}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_sterols_curated}}
−
* [[PWY-6387]]
+
{{#set: nb reaction associated=5}}
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
{{#set: nb pathway associated=7}}
−
* [[CITRULBIO-PWY]]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUTAMINDEG-PWY]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-4984]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7693]]
 
−
** '''3''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=461676}}
 
−
{{#set: left-end-position=422006}}
 
−
{{#set: centisome-position=63.376446   }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=9}}
 
−
{{#set: nb pathway associated=14}}
 

Revision as of 20:23, 18 December 2020

Gene SJ12148

  • transcription-direction:
    • positive
  • right-end-position:
    • 113423
  • left-end-position:
    • 106581
  • centisome-position:
    • 29.480053

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5981
    • 3 reactions found over 5 reactions in the full pathway
  • PWY0-1319
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5667
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7817
    • 6 reactions found over 16 reactions in the full pathway
  • PWY-7039
    • 4 reactions found over 5 reactions in the full pathway
  • TRIGLSYN-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7420
    • 4 reactions found over 4 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01523&oldid=42336"