Difference between revisions of "SJ01675"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ09475 == * transcription-direction: ** positive * right-end-position: ** 34938 * left-end-position: ** 17492 * centisome-position: ** 43.00113...")
(Created page with "Category:gene == Gene SJ02830 == * transcription-direction: ** negative * right-end-position: ** 160507 * left-end-position: ** 153349 * centisome-position: ** 28.769245...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09475 ==
+
== Gene SJ02830 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 34938
+
** 160507
 
* left-end-position:
 
* left-end-position:
−
** 17492
+
** 153349
 
* centisome-position:
 
* centisome-position:
−
** 43.00113    
+
** 28.769245    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
+
* [[2.7.8.23-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN]]
+
* [[23-DIMETHYLMALATE-LYASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ISOCIT-CLEAV-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10827]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
+
* [[RXN-10828]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[GLYSYN-ALA-PWY]]
+
* [[PWY-5055]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6922]]
+
* [[P105-PWY]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
* [[ARGININE-SYN4-PWY]]
+
* [[PWY-6969]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-3341]]
+
* [[GLYOXYLATE-BYPASS]]
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6344]]
+
* [[PWY-7769]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
* [[PWY-4981]]
+
* [[PWY-6322]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
* [[ARG-PRO-PWY]]
+
{{#set: transcription-direction=negative}}
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
{{#set: right-end-position=160507}}
−
* [[CITRULBIO-PWY]]
+
{{#set: left-end-position=153349}}
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
{{#set: centisome-position=28.769245   }}
−
* [[ARGASEDEG-PWY]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=34938}}
 
−
{{#set: left-end-position=17492}}
 
−
{{#set: centisome-position=43.00113   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=6}}

Revision as of 11:08, 15 January 2021

Gene SJ02830

  • transcription-direction:
    • negative
  • right-end-position:
    • 160507
  • left-end-position:
    • 153349
  • centisome-position:
    • 28.769245

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5055
    • 1 reactions found over 9 reactions in the full pathway
  • P105-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7769
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-6322
    • 2 reactions found over 25 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01675&oldid=108479"