Difference between revisions of "SJ01932"

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(Created page with "Category:gene == Gene SJ17231 == * transcription-direction: ** negative * right-end-position: ** 199445 * left-end-position: ** 191709 * centisome-position: ** 28.303802...")
(Created page with "Category:gene == Gene SJ01932 == * transcription-direction: ** positive * right-end-position: ** 114343 * left-end-position: ** 110218 * centisome-position: ** 76.66699...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ17231 ==
+
== Gene SJ01932 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 199445
+
** 114343
 
* left-end-position:
 
* left-end-position:
−
** 191709
+
** 110218
 
* centisome-position:
 
* centisome-position:
−
** 28.303802    
+
** 76.66699    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[2.4.1.109-RXN]]
+
* [[PMPOXI-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.4.1.117-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PNPOXI-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[PYRIDOXINE-4-OXIDASE-RXN]]
−
* [[2.4.1.83-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16602]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7921]]
+
* [[PLPSAL-PWY]]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7922]]
+
* [[PWY-7204]]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
+
* [[PYRIDOXSYN-PWY]]
−
** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7661]]
+
* [[PWY-7282]]
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-5499]]
−
{{#set: right-end-position=199445}}
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
{{#set: left-end-position=191709}}
+
{{#set: transcription-direction=positive}}
−
{{#set: centisome-position=28.303802   }}
+
{{#set: right-end-position=114343}}
 +
{{#set: left-end-position=110218}}
 +
{{#set: centisome-position=76.66699   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=5}}

Latest revision as of 11:05, 18 March 2021

Gene SJ01932

  • transcription-direction:
    • positive
  • right-end-position:
    • 114343
  • left-end-position:
    • 110218
  • centisome-position:
    • 76.66699

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204
    • 9 reactions found over 9 reactions in the full pathway
  • PYRIDOXSYN-PWY
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7282
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-5499
    • 1 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ01932&oldid=133813"