Difference between revisions of "SJ02143"
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(Created page with "Category:gene == Gene SJ09726 == * transcription-direction: ** positive * right-end-position: ** 549644 * left-end-position: ** 540666 * centisome-position: ** 66.52681...") |
(Created page with "Category:gene == Gene SJ02143 == * transcription-direction: ** negative * right-end-position: ** 67337 * left-end-position: ** 37275 * centisome-position: ** 26.438046...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ02143 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 67337 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 37275 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 26.438046 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[KETOGLUTREDUCT-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[PGLYCDEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PSERTRANSAM-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PSERTRANSAMPYR-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-16701]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | </div> |
| − | {{#set: right-end-position= | + | == Pathway(s) associated == |
| − | {{#set: left-end-position= | + | * [[P162-PWY]] |
| − | {{#set: centisome-position= | + | ** '''7''' reactions found over '''10''' reactions in the full pathway |
| + | * [[SERSYN-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PYRIDOXSYN-PWY]] | ||
| + | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=67337}} | ||
| + | {{#set: left-end-position=37275}} | ||
| + | {{#set: centisome-position=26.438046 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated=3}} | + | {{#set: nb reaction associated=5}} |
| + | {{#set: nb pathway associated=3}} | ||
Latest revision as of 11:00, 18 March 2021
Contents
Gene SJ02143
- transcription-direction:
- negative
- right-end-position:
- 67337
- left-end-position:
- 37275
- centisome-position:
- 26.438046
Organism(s) associated with this gene
Reaction(s) associated
- KETOGLUTREDUCT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PGLYCDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PSERTRANSAM-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PSERTRANSAMPYR-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-16701
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- P162-PWY
- 7 reactions found over 10 reactions in the full pathway
- SERSYN-PWY
- 3 reactions found over 3 reactions in the full pathway
- PYRIDOXSYN-PWY
- 3 reactions found over 7 reactions in the full pathway
