Difference between revisions of "SJ02270"
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(Created page with "Category:gene == Gene SJ03402 == * transcription-direction: ** negative * right-end-position: ** 145335 * left-end-position: ** 117413 * centisome-position: ** 22.346674...") |
(Created page with "Category:gene == Gene SJ00045 == * transcription-direction: ** positive * right-end-position: ** 706887 * left-end-position: ** 685451 * centisome-position: ** 46.659313...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ00045 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 706887 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 685451 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 46.659313 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[CHORISMATEMUT-RXN]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * [[PPDH]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * | + | * [[PREPHENATE-DEHYDROGENASE-NADP+-RXN]] |
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[PREPHENATEDEHYDRAT-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[PREPHENATEDEHYDROG-RXN]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-5682]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[PWY-3462]] | |
− | * [[PWY- | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | ** ''' | + | * [[TYRSYN]] |
− | * [[ | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6627]] |
− | * [[ | + | ** '''3''' reactions found over '''15''' reactions in the full pathway |
− | ** '''2''' reactions found over ''' | + | * [[PWY-3461]] |
− | * [[PWY- | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
− | ** '''1''' reactions found over '''2''' reactions in the full pathway | + | * [[PWY-6120]] |
− | * [[PWY- | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
+ | * [[PHESYN]] | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7626]] | ||
+ | ** '''1''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7432]] | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7303]] | ||
** '''1''' reactions found over '''4''' reactions in the full pathway | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
− | + | {{#set: transcription-direction=positive}} | |
− | + | {{#set: right-end-position=706887}} | |
− | + | {{#set: left-end-position=685451}} | |
− | + | {{#set: centisome-position=46.659313 }} | |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | {{#set: transcription-direction= | ||
− | {{#set: right-end-position= | ||
− | {{#set: left-end-position= | ||
− | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Revision as of 09:26, 27 August 2019
Contents
Gene SJ00045
- transcription-direction:
- positive
- right-end-position:
- 706887
- left-end-position:
- 685451
- centisome-position:
- 46.659313
Organism(s) associated with this gene
Reaction(s) associated
- CHORISMATEMUT-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- PPDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PREPHENATE-DEHYDROGENASE-NADP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- PREPHENATEDEHYDRAT-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PREPHENATEDEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-5682
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-3462
- 2 reactions found over 3 reactions in the full pathway
- TYRSYN
- 3 reactions found over 3 reactions in the full pathway
- PWY-6627
- 3 reactions found over 15 reactions in the full pathway
- PWY-3461
- 3 reactions found over 3 reactions in the full pathway
- PWY-6120
- 2 reactions found over 3 reactions in the full pathway
- PHESYN
- 3 reactions found over 3 reactions in the full pathway
- PWY-7626
- 1 reactions found over 10 reactions in the full pathway
- PWY-7432
- 3 reactions found over 2 reactions in the full pathway
- PWY-7303
- 1 reactions found over 4 reactions in the full pathway