Difference between revisions of "SJ02856"
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(Created page with "Category:gene == Gene SJ11016 == * transcription-direction: ** negative * right-end-position: ** 1352940 * left-end-position: ** 1347399 * centisome-position: ** 93.279236...") |
(Created page with "Category:gene == Gene SJ16454 == * transcription-direction: ** positive * right-end-position: ** 272225 * left-end-position: ** 270627 * centisome-position: ** 95.83584...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ16454 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 272225 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 270627 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 95.83584 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[NAG1P-URIDYLTRANS-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
| − | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | |
| − | + | * [[RXN-13760]] | |
| − | *** source: [[ | ||
| − | * [[ | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[PWY0-1261]] |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | ** '''3''' reactions found over '''12''' reactions in the full pathway |
| − | * [[PWY- | + | * [[UDPNACETYLGALSYN-PWY]] |
| − | ** ''' | + | ** '''3''' reactions found over '''6''' reactions in the full pathway |
| − | * [[ | + | * [[PWY-5514]] |
| − | ** ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[UDPNAGSYN-PWY]] |
| − | {{#set: right-end-position= | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | {{#set: transcription-direction=positive}} |
| − | {{#set: centisome-position= | + | {{#set: right-end-position=272225}} |
| + | {{#set: left-end-position=270627}} | ||
| + | {{#set: centisome-position=95.83584 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
Revision as of 09:25, 27 August 2019
Contents
Gene SJ16454
- transcription-direction:
- positive
- right-end-position:
- 272225
- left-end-position:
- 270627
- centisome-position:
- 95.83584
Organism(s) associated with this gene
Reaction(s) associated
- NAG1P-URIDYLTRANS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-13760
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY0-1261
- 3 reactions found over 12 reactions in the full pathway
- UDPNACETYLGALSYN-PWY
- 3 reactions found over 6 reactions in the full pathway
- PWY-5514
- 5 reactions found over 7 reactions in the full pathway
- UDPNAGSYN-PWY
- 4 reactions found over 5 reactions in the full pathway
