Difference between revisions of "SJ02880"
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(Created page with "Category:gene == Gene SJ06222 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * 3.4.22.15-RXN ** Categ...") |
(Created page with "Category:gene == Gene SJ00348 == * transcription-direction: ** positive * right-end-position: ** 62269 * left-end-position: ** 57108 * centisome-position: ** 33.94376...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ00348 == |
| + | * transcription-direction: | ||
| + | ** positive | ||
| + | * right-end-position: | ||
| + | ** 62269 | ||
| + | * left-end-position: | ||
| + | ** 57108 | ||
| + | * centisome-position: | ||
| + | ** 33.94376 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[GAPDHSYNEC-RXN]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[GAPOXNPHOSPHN-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-15115]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
| + | * [[GLUCONEO-PWY]] | ||
| + | ** '''12''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[P124-PWY]] | ||
| + | ** '''12''' reactions found over '''15''' reactions in the full pathway | ||
| + | * [[P185-PWY]] | ||
| + | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[P122-PWY]] | ||
| + | ** '''16''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY-5484]] | ||
| + | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-1042]] | ||
| + | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[GLYCOLYSIS]] | ||
| + | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[ANAGLYCOLYSIS-PWY]] | ||
| + | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[SUCSYN-PWY]] | ||
| + | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY66-399]] | ||
| + | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[PWY-6901]] | ||
| + | ** '''10''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-7003]] | ||
| + | ** '''8''' reactions found over '''6''' reactions in the full pathway | ||
| + | </div> | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=62269}} | ||
| + | {{#set: left-end-position=57108}} | ||
| + | {{#set: centisome-position=33.94376 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| + | {{#set: nb pathway associated=12}} | ||
Revision as of 15:15, 5 January 2021
Contents
Gene SJ00348
- transcription-direction:
- positive
- right-end-position:
- 62269
- left-end-position:
- 57108
- centisome-position:
- 33.94376
Organism(s) associated with this gene
Reaction(s) associated
- GAPDHSYNEC-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GAPOXNPHOSPHN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-15115
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- GLUCONEO-PWY
- 12 reactions found over 13 reactions in the full pathway
- P124-PWY
- 12 reactions found over 15 reactions in the full pathway
- P185-PWY
- 11 reactions found over 12 reactions in the full pathway
- P122-PWY
- 16 reactions found over 18 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- PWY-1042
- 9 reactions found over 10 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- PWY-6901
- 10 reactions found over 8 reactions in the full pathway
- PWY-7003
- 8 reactions found over 6 reactions in the full pathway
