Difference between revisions of "SJ03066"

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(Created page with "Category:gene == Gene SJ17348 == * transcription-direction: ** positive * right-end-position: ** 41766 * left-end-position: ** 28599 * centisome-position: ** 10.866625...")
(Created page with "Category:gene == Gene SJ03066 == * transcription-direction: ** negative * right-end-position: ** 85681 * left-end-position: ** 75918 * centisome-position: ** 60.4563 =...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ17348 ==
+
== Gene SJ03066 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 41766
+
** 85681
 
* left-end-position:
 
* left-end-position:
−
** 28599
+
** 75918
 
* centisome-position:
 
* centisome-position:
−
** 10.866625    
+
** 60.4563    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN]]
+
* [[4-COUMARATE--COA-LIGASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[HBCO_LPAREN_nadp_RPAREN_]]
+
* [[6.2.1.34-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[HBCO_LPAREN_nadp_RPAREN_m]]
+
* [[O-SUCCINYLBENZOATE-COA-LIG-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[OHACYL-COA-DEHYDROG-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10698]]
+
* [[RXN-10919]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10702]]
+
* [[RXN-1126]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10703]]
+
* [[RXN-2001]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-11245]]
+
* [[RXN-7614]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11662]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12490]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12570]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12705]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12750]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16133]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17777]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17781]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17786]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17790]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17793]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17794]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17797]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17798]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-905]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-2044]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9623]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[llcoas]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-5136]]
+
* [[PWY-7397]]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[FAO-PWY]]
+
* [[PWY-6320]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY66-391]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7007]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-735]]
 
−
** '''16''' reactions found over '''19''' reactions in the full pathway
 
 
* [[PWY-6435]]
 
* [[PWY-6435]]
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5177]]
+
* [[PWY1F-FLAVSYN]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7778]]
+
* [[PWY-361]]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''7''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-6863]]
+
* [[PWY-5135]]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[CENTFERM-PWY]]
+
* [[PWY-7398]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6583]]
+
* [[PWY-7046]]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6883]]
+
* [[PWY-7897]]
 +
** '''3''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5754]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6920]]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5789]]
+
* [[PWY-6982]]
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[P162-PWY]]
+
* [[PWY-6343]]
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7216]]
+
* [[PWY-1121]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''20''' reactions in the full pathway
−
* [[PWY-7401]]
+
* [[PWY-5837]]
−
** '''6''' reactions found over '''15''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7779]]
+
* [[PWY-6673]]
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7094]]
+
* [[PWY-6457]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6945]]
+
* [[PWY-5971]]
−
** '''5''' reactions found over '''17''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[PWY-6946]]
+
* [[PWY-5972]]
−
** '''6''' reactions found over '''22''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6944]]
 
−
** '''2''' reactions found over '''25''' reactions in the full pathway
 
−
* [[PWY-81]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY0-321]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-1361]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=41766}}
+
{{#set: right-end-position=85681}}
−
{{#set: left-end-position=28599}}
+
{{#set: left-end-position=75918}}
−
{{#set: centisome-position=10.866625   }}
+
{{#set: centisome-position=60.4563   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=24}}
+
{{#set: nb reaction associated=9}}
−
{{#set: nb pathway associated=24}}
+
{{#set: nb pathway associated=19}}

Latest revision as of 11:09, 18 March 2021

Gene SJ03066

  • transcription-direction:
    • negative
  • right-end-position:
    • 85681
  • left-end-position:
    • 75918
  • centisome-position:
    • 60.4563

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6320
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6435
    • 4 reactions found over 5 reactions in the full pathway
  • PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-361
    • 7 reactions found over 15 reactions in the full pathway
  • PWY-5135
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7398
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-7046
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7897
    • 3 reactions found over 15 reactions in the full pathway
  • PWY-5754
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6920
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6982
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6343
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-1121
    • 9 reactions found over 20 reactions in the full pathway
  • PWY-5837
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6673
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6457
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5972
    • 4 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ03066&oldid=135904"