Difference between revisions of "SJ03066"
Jump to navigation
Jump to search
(Created page with "Category:gene == Gene SJ17348 == * transcription-direction: ** positive * right-end-position: ** 41766 * left-end-position: ** 28599 * centisome-position: ** 10.866625...") |
(Created page with "Category:gene == Gene SJ03066 == * transcription-direction: ** negative * right-end-position: ** 85681 * left-end-position: ** 75918 * centisome-position: ** 60.4563 =...") |
||
(5 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ03066 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 85681 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 75918 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 60.4563 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[4-COUMARATE--COA-LIGASE-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[6.2.1.34-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[O-SUCCINYLBENZOATE-COA-LIG-RXN]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-10919]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-1126]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-2001]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-7614]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-9623]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[llcoas]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[PWY- | + | * [[PWY-7397]] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | + | * [[PWY-6320]] | |
− | + | ** '''1''' reactions found over '''5''' reactions in the full pathway | |
− | |||
− | |||
− | |||
− | |||
− | * [[PWY- | ||
− | ** ''' | ||
* [[PWY-6435]] | * [[PWY-6435]] | ||
** '''4''' reactions found over '''5''' reactions in the full pathway | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY1F-FLAVSYN]] |
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-361]] |
− | ** '''3''' reactions found over ''' | + | ** '''7''' reactions found over '''15''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5135]] |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
− | * [[ | + | * [[PWY-7398]] |
− | ** ''' | + | ** '''3''' reactions found over '''13''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7046]] |
− | ** ''' | + | ** '''2''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7897]] |
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-5754]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6920]] | ||
** '''5''' reactions found over '''6''' reactions in the full pathway | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6982]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | + | * [[PWY-6343]] | |
− | + | ** '''1''' reactions found over '''3''' reactions in the full pathway | |
− | + | * [[PWY-1121]] | |
− | + | ** '''9''' reactions found over '''20''' reactions in the full pathway | |
− | * [[PWY- | + | * [[PWY-5837]] |
− | ** ''' | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6673]] |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6457]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5971]] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5972]] |
− | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
− | * [[PWY- | ||
− | ** ''' | ||
− | * [[PWY- | ||
− | ** ''' | ||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
− | {{#set: transcription-direction= | + | {{#set: transcription-direction=negative}} |
− | {{#set: right-end-position= | + | {{#set: right-end-position=85681}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=75918}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=60.4563 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=9}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=19}} |
Latest revision as of 11:09, 18 March 2021
Contents
Gene SJ03066
- transcription-direction:
- negative
- right-end-position:
- 85681
- left-end-position:
- 75918
- centisome-position:
- 60.4563
Organism(s) associated with this gene
Reaction(s) associated
- 4-COUMARATE--COA-LIGASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 6.2.1.34-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- O-SUCCINYLBENZOATE-COA-LIG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10919
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-1126
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-2001
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7614
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-9623
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- llcoas
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-7397
- 3 reactions found over 4 reactions in the full pathway
- PWY-6320
- 1 reactions found over 5 reactions in the full pathway
- PWY-6435
- 4 reactions found over 5 reactions in the full pathway
- PWY1F-FLAVSYN
- 5 reactions found over 5 reactions in the full pathway
- PWY-361
- 7 reactions found over 15 reactions in the full pathway
- PWY-5135
- 2 reactions found over 4 reactions in the full pathway
- PWY-7398
- 3 reactions found over 13 reactions in the full pathway
- PWY-7046
- 2 reactions found over 6 reactions in the full pathway
- PWY-7897
- 3 reactions found over 15 reactions in the full pathway
- PWY-5754
- 2 reactions found over 5 reactions in the full pathway
- PWY-6920
- 5 reactions found over 6 reactions in the full pathway
- PWY-6982
- 1 reactions found over 3 reactions in the full pathway
- PWY-6343
- 1 reactions found over 3 reactions in the full pathway
- PWY-1121
- 9 reactions found over 20 reactions in the full pathway
- PWY-5837
- 4 reactions found over 7 reactions in the full pathway
- PWY-6673
- 1 reactions found over 3 reactions in the full pathway
- PWY-6457
- 1 reactions found over 2 reactions in the full pathway
- PWY-5971
- 31 reactions found over 31 reactions in the full pathway
- PWY-5972
- 4 reactions found over 6 reactions in the full pathway