Difference between revisions of "SJ03226"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] == * common-name: ** undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-...")
(Created page with "Category:gene == Gene SJ03226 == * transcription-direction: ** positive * right-end-position: ** 188306 * left-end-position: ** 138541 * centisome-position: ** 26.23187...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=C5 C5] ==
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== Gene SJ03226 ==
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* common-name:
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* transcription-direction:
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** undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine
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** positive
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* smiles:
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* right-end-position:
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** cc(c)=cccc(c)=cccc(c)=cccc(=cccc(=cccc(=cccc(c)=cccc(=cccc(=cccc(=cccc(=ccop(op([o-])(=o)oc1(c(nc(=o)c)c(oc(c)c(=o)nc(c)c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc([n+])c(=o)[o-])c(nc(c)c(=o)nc(c)c([o-])=o)=o)c(o)c(co)o1))([o-])=o)c)c)c)c)c)c)c
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** 188306
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* inchi-key:
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* left-end-position:
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** pnwzqtonlrrpst-kldrqjoasa-j
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** 138541
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* molecular-weight:
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* centisome-position:
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** 1713.036
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** 26.23187   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to produce the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[PHOSNACMURPENTATRANS-RXN]]
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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* [[HOMOCYSMET-RXN]]
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{{#set: common-name=undecaprenyldiphospho-n-acetylmuramoyl-l-alanyl-γ-d-glutamyl-meso-2,6-diaminopimeloyl-d-alanyl-d-alanine}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=pnwzqtonlrrpst-kldrqjoasa-j}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=1713.036}}
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* [[HOMOCYSMETB12-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-702]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5041]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[HSERMETANA-PWY]]
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** '''3''' reactions found over '''2''' reactions in the full pathway
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* [[HOMOSER-METSYN-PWY]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6151]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-3841]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[1CMET2-PWY]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[ADENOSYLHOMOCYSCAT-PWY]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-2201]]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=188306}}
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{{#set: left-end-position=138541}}
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{{#set: centisome-position=26.23187    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=9}}

Latest revision as of 11:03, 18 March 2021

Gene SJ03226

  • transcription-direction:
    • positive
  • right-end-position:
    • 188306
  • left-end-position:
    • 138541
  • centisome-position:
    • 26.23187

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-702
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5041
    • 3 reactions found over 3 reactions in the full pathway
  • HSERMETANA-PWY
    • 3 reactions found over 2 reactions in the full pathway
  • HOMOSER-METSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6151
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • 1CMET2-PWY
    • 8 reactions found over 9 reactions in the full pathway
  • ADENOSYLHOMOCYSCAT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-2201
    • 9 reactions found over 10 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ03226&oldid=133035"