Difference between revisions of "SJ03655"
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(Created page with "Category:gene == Gene SJ11130 == * transcription-direction: ** negative * right-end-position: ** 15844 * left-end-position: ** 4451 * centisome-position: ** 18.83782 =...") |
(Created page with "Category:gene == Gene SJ03655 == * transcription-direction: ** positive * right-end-position: ** 136197 * left-end-position: ** 105471 * centisome-position: ** 10.334702...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ03655 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 136197 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 105471 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 10.334702 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[PMPOXI-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PNPOXI-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PYRIDOXINE-4-OXIDASE-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-12752]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN-13142]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PLPSAL-PWY]] |
| − | ** '''6''' reactions found over ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-7204]] |
| − | {{#set: right-end-position= | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PYRIDOXSYN-PWY]] |
| − | {{#set: centisome-position= | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
| + | * [[PWY-7282]] | ||
| + | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWY-5499]] | ||
| + | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-6938]] | ||
| + | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=136197}} | ||
| + | {{#set: left-end-position=105471}} | ||
| + | {{#set: centisome-position=10.334702 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Latest revision as of 11:04, 18 March 2021
Contents
Gene SJ03655
- transcription-direction:
- positive
- right-end-position:
- 136197
- left-end-position:
- 105471
- centisome-position:
- 10.334702
Organism(s) associated with this gene
Reaction(s) associated
- PMPOXI-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PNPOXI-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PYRIDOXINE-4-OXIDASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12752
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13142
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PLPSAL-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-7204
- 9 reactions found over 9 reactions in the full pathway
- PYRIDOXSYN-PWY
- 3 reactions found over 7 reactions in the full pathway
- PWY-7282
- 6 reactions found over 10 reactions in the full pathway
- PWY-5499
- 1 reactions found over 9 reactions in the full pathway
- PWY-6938
- 2 reactions found over 4 reactions in the full pathway
