Difference between revisions of "SJ03828"

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(Created page with "Category:gene == Gene SJ14130 == * transcription-direction: ** negative * right-end-position: ** 119372 * left-end-position: ** 114728 * centisome-position: ** 35.418076...")
(Created page with "Category:gene == Gene SJ09087 == * transcription-direction: ** positive * right-end-position: ** 341500 * left-end-position: ** 317846 * centisome-position: ** 74.58827...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ14130 ==
+
== Gene SJ09087 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 119372
+
** 341500
 
* left-end-position:
 
* left-end-position:
−
** 114728
+
** 317846
 
* centisome-position:
 
* centisome-position:
−
** 35.418076    
+
** 74.58827    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_carotenoid_curated]]
+
* [[S.japonica_sterols_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[1.14.13.78-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-1121]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12510]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13492]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13721]]
+
* [[RXN-13493]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-6384]]
+
* [[RXN-13494]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13506]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-3661]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-5242]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7580]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7651]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[TRANS-CINNAMATE-4-MONOOXYGENASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[UNSPECIFIC-MONOOXYGENASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[VALDEG-PWY]]
+
* [[PWY-5047]]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''15''' reactions in the full pathway
−
* [[PWY-3941]]
+
* [[PWY-5034]]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7574]]
+
* [[PWY-2181]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-3101]]
−
{{#set: right-end-position=119372}}
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
{{#set: left-end-position=114728}}
+
* [[PWY-7066]]
−
{{#set: centisome-position=35.418076   }}
+
** '''3''' reactions found over '''12''' reactions in the full pathway
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
* [[PWY-5640]]
−
{{#set: nb reaction associated=3}}
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
{{#set: nb pathway associated=3}}
+
* [[PWY-5060]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY1F-467]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-1121]]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=341500}}
 +
{{#set: left-end-position=317846}}
 +
{{#set: centisome-position=74.58827   }}
 +
{{#set: organism associated=S.japonica_sterols_curated}}
 +
{{#set: nb reaction associated=13}}
 +
{{#set: nb pathway associated=9}}

Revision as of 20:24, 18 December 2020

Gene SJ09087

  • transcription-direction:
    • positive
  • right-end-position:
    • 341500
  • left-end-position:
    • 317846
  • centisome-position:
    • 74.58827

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5047
    • 6 reactions found over 15 reactions in the full pathway
  • PWY-5034
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-2181
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3101
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7066
    • 3 reactions found over 12 reactions in the full pathway
  • PWY-5640
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5060
    • 1 reactions found over 6 reactions in the full pathway
  • PWY1F-467
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-1121
    • 9 reactions found over 19 reactions in the full pathway




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