Difference between revisions of "SJ03879"

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(Created page with "Category:gene == Gene SJ15949 == * transcription-direction: ** negative * right-end-position: ** 79869 * left-end-position: ** 64576 * centisome-position: ** 22.334513...")
(Created page with "Category:gene == Gene SJ03879 == * transcription-direction: ** positive * right-end-position: ** 38277 * left-end-position: ** 32554 * centisome-position: ** 6.2690773...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ15949 ==
+
== Gene SJ03879 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 79869
+
** 38277
 
* left-end-position:
 
* left-end-position:
−
** 64576
+
** 32554
 
* centisome-position:
 
* centisome-position:
−
** 22.334513    
+
** 6.2690773    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ASPCARBTRANS-RXN]]
+
* [[3.1.1.64-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[AMINOCYL-TRNA-HYDROLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[CARBPSYN-RXN]]
+
* [[CARBOXYLESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RETINYL-PALMITATE-ESTERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10711]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DIHYDROOROT-RXN]]
+
* [[RXN-10767]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GLUTAMIN-RXN]]
+
* [[RXN-12252]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13202]]
+
* [[RXN-12460]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14196]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16909]]
+
* [[RXN-16637]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16910]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXNQT-4366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6303]]
−
* [[PWY-5686]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY490-4]]
−
* [[PWY-7790]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-6857]]
−
* [[PWY-7791]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-6308]]
−
* [[PWY-7400]]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[ARGSYN-PWY]]
+
{{#set: right-end-position=38277}}
−
** '''5''' reactions found over '''4''' reactions in the full pathway
+
{{#set: left-end-position=32554}}
−
* [[ARGSYNBSUB-PWY]]
+
{{#set: centisome-position=6.2690773   }}
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5154]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[CITRULBIO-PWY]]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUTAMINDEG-PWY]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-4984]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7693]]
 
−
** '''3''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=79869}}
 
−
{{#set: left-end-position=64576}}
 
−
{{#set: centisome-position=22.334513   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=11}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:07, 18 March 2021

Gene SJ03879

  • transcription-direction:
    • positive
  • right-end-position:
    • 38277
  • left-end-position:
    • 32554
  • centisome-position:
    • 6.2690773

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6303
    • 1 reactions found over 2 reactions in the full pathway
  • PWY490-4
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6857
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6308
    • 1 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ03879&oldid=134785"