Difference between revisions of "SJ03883"
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(Created page with "Category:gene == Gene SJ03883 == * transcription-direction: ** negative * right-end-position: ** 125856 * left-end-position: ** 117278 * centisome-position: ** 22.584776...") |
(Created page with "Category:gene == Gene SJ16706 == * transcription-direction: ** negative * right-end-position: ** 259233 * left-end-position: ** 249991 * centisome-position: ** 90.0888...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ16706 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 259233 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 249991 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 90.0888 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[ACSERLY-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | + | * [[RXN-12726]] | |
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− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN0-2381]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[RXN0-2382]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN | + | * [[SULFOCYS-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[TRYPSYN-RXN]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
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</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[CYSTSYN-PWY]] | |
− | * [[ | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-6936]] | ||
** '''5''' reactions found over '''5''' reactions in the full pathway | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6949]] |
− | + | ** '''1''' reactions found over '''6''' reactions in the full pathway | |
− | + | * [[TRPSYN-PWY]] | |
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− | ** '''1''' reactions found over ''' | ||
− | * [[ | ||
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** '''6''' reactions found over '''6''' reactions in the full pathway | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-7870]] |
− | ** ''' | + | ** '''2''' reactions found over '''4''' reactions in the full pathway |
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{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=259233}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=249991}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=90.0888 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Revision as of 11:07, 15 January 2021
Contents
Gene SJ16706
- transcription-direction:
- negative
- right-end-position:
- 259233
- left-end-position:
- 249991
- centisome-position:
- 90.0888
Organism(s) associated with this gene
Reaction(s) associated
- ACSERLY-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-12726
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-2381
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-2382
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- SULFOCYS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- TRYPSYN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- CYSTSYN-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-6936
- 5 reactions found over 5 reactions in the full pathway
- PWY-6949
- 1 reactions found over 6 reactions in the full pathway
- TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-7870
- 2 reactions found over 4 reactions in the full pathway